MIPS: analysis and annotation of proteins from whole genomes

The Munich Information Center for Protein Sequences (MIPS‐GSF), Neuherberg, Germany, provides protein sequence‐related information based on whole‐genome analysis. The main focus of the work is directed toward the systematic organization of sequence‐related attributes as gathered by a variety of algo...

Full description

Saved in:
Bibliographic Details
Published in:Nucleic acids research 2004-01, Vol.32 (suppl-1), p.D41-D44
Main Authors: Mewes, H. W., Amid, C., Arnold, R., Frishman, D., Güldener, U., Mannhaupt, G., Münsterkötter, M., Pagel, P., Strack, N., Stümpflen, V., Warfsmann, J., Ruepp, A.
Format: Article
Language:English
Subjects:
Animals
Arabidopsis thaliana
Computational Biology
Databases, Protein
DNA, Complementary - genetics
Fungi - genetics
Genome
Humans
Internet
Models, Biological
Neurospora crassa
Oryza sativa
Protein Binding
Proteomics
Sequence Homology
Citations: Items that cite this one
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
Description
Summary:The Munich Information Center for Protein Sequences (MIPS‐GSF), Neuherberg, Germany, provides protein sequence‐related information based on whole‐genome analysis. The main focus of the work is directed toward the systematic organization of sequence‐related attributes as gathered by a variety of algorithms, primary information from experimental data together with information compiled from the scientific literature. MIPS maintains automatically generated and manually annotated genome‐specific databases, develops systematic classification schemes for the functional annotation of protein sequences and provides tools for the comprehensive analysis of protein sequences. This report updates the information on the yeast genome (CYGD), the Neurospora crassa genome (MNCDB), the database of complete cDNAs (German Human Genome Project, NGFN), the database of mammalian protein–protein interactions (MPPI), the database of FASTA homologies (SIMAP), and the interface for the fast retrieval of protein‐associated information (QUIPOS). The Arabidopsis thaliana database, the rice database, the plant EST databases (MATDB, MOsDB, SPUTNIK), as well as the databases for the comprehensive set of genomes (PEDANT genomes) are described elsewhere in the 2003 and 2004 NAR database issues, respectively. All databases described, and the detailed descriptions of our projects can be accessed through the MIPS web server (http://mips.gsf.de).
ISSN:0305-1048
1362-4962
1362-4962
DOI:10.1093/nar/gkh092