Loading…
An agent-based model of inflammation and fibrosis following particulate exposure in the lung
Inflammation and airway remodeling occur in a variety of airway diseases. Modeling aspects of the inflammatory and fibrotic processes following repeated exposure to particulate matter may provide insights into a spectrum of airway diseases, as well as prevention/treatment strategies. An agent-based...
Saved in:
Published in: | Mathematical biosciences 2011-06, Vol.231 (2), p.186-196 |
---|---|
Main Authors: | , , , , , , , |
Format: | Article |
Language: | English |
Subjects: | |
Citations: | Items that this one cites Items that cite this one |
Online Access: | Get full text |
Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
cited_by | cdi_FETCH-LOGICAL-c482t-601d9a1c1a49ae76c107521b5e07e1b22cb22820fb21bf6725b114ef557b9bb33 |
---|---|
cites | cdi_FETCH-LOGICAL-c482t-601d9a1c1a49ae76c107521b5e07e1b22cb22820fb21bf6725b114ef557b9bb33 |
container_end_page | 196 |
container_issue | 2 |
container_start_page | 186 |
container_title | Mathematical biosciences |
container_volume | 231 |
creator | Brown, Bryan N. Price, Ian M. Toapanta, Franklin R. DeAlmeida, Dilhari R. Wiley, Clayton A. Ross, Ted M. Oury, Tim D. Vodovotz, Yoram |
description | Inflammation and airway remodeling occur in a variety of airway diseases. Modeling aspects of the inflammatory and fibrotic processes following repeated exposure to particulate matter may provide insights into a spectrum of airway diseases, as well as prevention/treatment strategies. An agent-based model (ABM) was created to examine the response of an abstracted population of inflammatory cells (nominally macrophages, but possibly including other inflammatory cells such as lymphocytes) and cells involved in remodeling (nominally fibroblasts) to particulate exposure. The model focused on a limited number of relevant interactions, specifically those among macrophages, fibroblasts, a pro-inflammatory cytokine (TNF-α), an anti-inflammatory cytokine (TGF-β1), collagen deposition, and tissue damage. The model yielded three distinct states that were equated with (1) self-resolving inflammation and a return to baseline, (2) a pro-inflammatory process of localized tissue damage and fibrosis, and (3) elevated pro- and anti-inflammatory cytokines, persistent tissue damage, and fibrosis outcomes. Experimental results consistent with these predicted states were observed in histology sections of lung tissue from mice exposed to particulate matter. Systematic
in silico studies suggested that the development of each state depended primarily upon the degree and duration of exposure. Thus, a relatively simple ABM resulted in several, biologically feasible, emergent states, suggesting that the model captures certain salient features of inflammation following exposure of the lung to particulate matter. This ABM may hold future utility in the setting of airway disease resulting from inflammation and fibrosis following particulate exposure. |
doi_str_mv | 10.1016/j.mbs.2011.03.005 |
format | article |
fullrecord | <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_3088650</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><els_id>S0025556411000356</els_id><sourcerecordid>874181963</sourcerecordid><originalsourceid>FETCH-LOGICAL-c482t-601d9a1c1a49ae76c107521b5e07e1b22cb22820fb21bf6725b114ef557b9bb33</originalsourceid><addsrcrecordid>eNp9kU9rFTEUxYMo9ln9AG4kO1cz5mYm8wdBKMVWoeCm3Qkhydy85pFJnslMq9--ebxadNNFuJCcc27u_RHyHlgNDLpPu3rWueYMoGZNzZh4QTYw9GPVQNO-JBvGuKiE6NoT8ibnHWPQA3SvyQmHZhBiGDfk51mgaothqbTKONE5TuhptNQF69U8q8XFoggTtU6nmF2mNnof713Y0r1KizOrVwtS_L2PeU1YjHS5RerXsH1LXlnlM757rKfk5uLr9fm36urH5ffzs6vKtANfqo7BNCowoNpRYd8ZYL3goAWyHkFzbsoZOLO6XNqu50IDtGiF6PWoddOcki_H3P2qZ5xMGScpL_fJzSr9kVE5-f9LcLdyG-9kw4ahE6wEfHwMSPHXinmRs8sGvVcB45rl0LcwwNgdWsFRacoyckL71AWYPECRO1mgyAMUyRpZoBTPh3-_9-T4S6EIPh8FWJZ05zDJbBwGg5NLaBY5RfdM_AMC8p7h</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>874181963</pqid></control><display><type>article</type><title>An agent-based model of inflammation and fibrosis following particulate exposure in the lung</title><source>ScienceDirect Journals</source><source>Backfile Package - Mathematics (Legacy) [YMT]</source><creator>Brown, Bryan N. ; Price, Ian M. ; Toapanta, Franklin R. ; DeAlmeida, Dilhari R. ; Wiley, Clayton A. ; Ross, Ted M. ; Oury, Tim D. ; Vodovotz, Yoram</creator><creatorcontrib>Brown, Bryan N. ; Price, Ian M. ; Toapanta, Franklin R. ; DeAlmeida, Dilhari R. ; Wiley, Clayton A. ; Ross, Ted M. ; Oury, Tim D. ; Vodovotz, Yoram</creatorcontrib><description>Inflammation and airway remodeling occur in a variety of airway diseases. Modeling aspects of the inflammatory and fibrotic processes following repeated exposure to particulate matter may provide insights into a spectrum of airway diseases, as well as prevention/treatment strategies. An agent-based model (ABM) was created to examine the response of an abstracted population of inflammatory cells (nominally macrophages, but possibly including other inflammatory cells such as lymphocytes) and cells involved in remodeling (nominally fibroblasts) to particulate exposure. The model focused on a limited number of relevant interactions, specifically those among macrophages, fibroblasts, a pro-inflammatory cytokine (TNF-α), an anti-inflammatory cytokine (TGF-β1), collagen deposition, and tissue damage. The model yielded three distinct states that were equated with (1) self-resolving inflammation and a return to baseline, (2) a pro-inflammatory process of localized tissue damage and fibrosis, and (3) elevated pro- and anti-inflammatory cytokines, persistent tissue damage, and fibrosis outcomes. Experimental results consistent with these predicted states were observed in histology sections of lung tissue from mice exposed to particulate matter. Systematic
in silico studies suggested that the development of each state depended primarily upon the degree and duration of exposure. Thus, a relatively simple ABM resulted in several, biologically feasible, emergent states, suggesting that the model captures certain salient features of inflammation following exposure of the lung to particulate matter. This ABM may hold future utility in the setting of airway disease resulting from inflammation and fibrosis following particulate exposure.</description><identifier>ISSN: 0025-5564</identifier><identifier>EISSN: 1879-3134</identifier><identifier>DOI: 10.1016/j.mbs.2011.03.005</identifier><identifier>PMID: 21385589</identifier><language>eng</language><publisher>United States: Elsevier Inc</publisher><subject>Agent-based model ; Animal models ; Animals ; Computer Simulation ; Fibrosis ; Inflammation - chemically induced ; Inflammation - pathology ; Lung ; Lung Diseases - chemically induced ; Lung Diseases - pathology ; Mice ; Models, Biological ; Particulate Matter - adverse effects ; Pulmonary Fibrosis - chemically induced ; Pulmonary Fibrosis - pathology ; Systems biology</subject><ispartof>Mathematical biosciences, 2011-06, Vol.231 (2), p.186-196</ispartof><rights>2011 Elsevier Inc.</rights><rights>Copyright © 2011 Elsevier Inc. All rights reserved.</rights><rights>2011 Elsevier Inc. All rights reserved. 2011</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c482t-601d9a1c1a49ae76c107521b5e07e1b22cb22820fb21bf6725b114ef557b9bb33</citedby><cites>FETCH-LOGICAL-c482t-601d9a1c1a49ae76c107521b5e07e1b22cb22820fb21bf6725b114ef557b9bb33</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.sciencedirect.com/science/article/pii/S0025556411000356$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>230,314,780,784,885,3562,27922,27923,46001</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/21385589$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Brown, Bryan N.</creatorcontrib><creatorcontrib>Price, Ian M.</creatorcontrib><creatorcontrib>Toapanta, Franklin R.</creatorcontrib><creatorcontrib>DeAlmeida, Dilhari R.</creatorcontrib><creatorcontrib>Wiley, Clayton A.</creatorcontrib><creatorcontrib>Ross, Ted M.</creatorcontrib><creatorcontrib>Oury, Tim D.</creatorcontrib><creatorcontrib>Vodovotz, Yoram</creatorcontrib><title>An agent-based model of inflammation and fibrosis following particulate exposure in the lung</title><title>Mathematical biosciences</title><addtitle>Math Biosci</addtitle><description>Inflammation and airway remodeling occur in a variety of airway diseases. Modeling aspects of the inflammatory and fibrotic processes following repeated exposure to particulate matter may provide insights into a spectrum of airway diseases, as well as prevention/treatment strategies. An agent-based model (ABM) was created to examine the response of an abstracted population of inflammatory cells (nominally macrophages, but possibly including other inflammatory cells such as lymphocytes) and cells involved in remodeling (nominally fibroblasts) to particulate exposure. The model focused on a limited number of relevant interactions, specifically those among macrophages, fibroblasts, a pro-inflammatory cytokine (TNF-α), an anti-inflammatory cytokine (TGF-β1), collagen deposition, and tissue damage. The model yielded three distinct states that were equated with (1) self-resolving inflammation and a return to baseline, (2) a pro-inflammatory process of localized tissue damage and fibrosis, and (3) elevated pro- and anti-inflammatory cytokines, persistent tissue damage, and fibrosis outcomes. Experimental results consistent with these predicted states were observed in histology sections of lung tissue from mice exposed to particulate matter. Systematic
in silico studies suggested that the development of each state depended primarily upon the degree and duration of exposure. Thus, a relatively simple ABM resulted in several, biologically feasible, emergent states, suggesting that the model captures certain salient features of inflammation following exposure of the lung to particulate matter. This ABM may hold future utility in the setting of airway disease resulting from inflammation and fibrosis following particulate exposure.</description><subject>Agent-based model</subject><subject>Animal models</subject><subject>Animals</subject><subject>Computer Simulation</subject><subject>Fibrosis</subject><subject>Inflammation - chemically induced</subject><subject>Inflammation - pathology</subject><subject>Lung</subject><subject>Lung Diseases - chemically induced</subject><subject>Lung Diseases - pathology</subject><subject>Mice</subject><subject>Models, Biological</subject><subject>Particulate Matter - adverse effects</subject><subject>Pulmonary Fibrosis - chemically induced</subject><subject>Pulmonary Fibrosis - pathology</subject><subject>Systems biology</subject><issn>0025-5564</issn><issn>1879-3134</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2011</creationdate><recordtype>article</recordtype><recordid>eNp9kU9rFTEUxYMo9ln9AG4kO1cz5mYm8wdBKMVWoeCm3Qkhydy85pFJnslMq9--ebxadNNFuJCcc27u_RHyHlgNDLpPu3rWueYMoGZNzZh4QTYw9GPVQNO-JBvGuKiE6NoT8ibnHWPQA3SvyQmHZhBiGDfk51mgaothqbTKONE5TuhptNQF69U8q8XFoggTtU6nmF2mNnof713Y0r1KizOrVwtS_L2PeU1YjHS5RerXsH1LXlnlM757rKfk5uLr9fm36urH5ffzs6vKtANfqo7BNCowoNpRYd8ZYL3goAWyHkFzbsoZOLO6XNqu50IDtGiF6PWoddOcki_H3P2qZ5xMGScpL_fJzSr9kVE5-f9LcLdyG-9kw4ahE6wEfHwMSPHXinmRs8sGvVcB45rl0LcwwNgdWsFRacoyckL71AWYPECRO1mgyAMUyRpZoBTPh3-_9-T4S6EIPh8FWJZ05zDJbBwGg5NLaBY5RfdM_AMC8p7h</recordid><startdate>20110601</startdate><enddate>20110601</enddate><creator>Brown, Bryan N.</creator><creator>Price, Ian M.</creator><creator>Toapanta, Franklin R.</creator><creator>DeAlmeida, Dilhari R.</creator><creator>Wiley, Clayton A.</creator><creator>Ross, Ted M.</creator><creator>Oury, Tim D.</creator><creator>Vodovotz, Yoram</creator><general>Elsevier Inc</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QO</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>5PM</scope></search><sort><creationdate>20110601</creationdate><title>An agent-based model of inflammation and fibrosis following particulate exposure in the lung</title><author>Brown, Bryan N. ; Price, Ian M. ; Toapanta, Franklin R. ; DeAlmeida, Dilhari R. ; Wiley, Clayton A. ; Ross, Ted M. ; Oury, Tim D. ; Vodovotz, Yoram</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c482t-601d9a1c1a49ae76c107521b5e07e1b22cb22820fb21bf6725b114ef557b9bb33</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2011</creationdate><topic>Agent-based model</topic><topic>Animal models</topic><topic>Animals</topic><topic>Computer Simulation</topic><topic>Fibrosis</topic><topic>Inflammation - chemically induced</topic><topic>Inflammation - pathology</topic><topic>Lung</topic><topic>Lung Diseases - chemically induced</topic><topic>Lung Diseases - pathology</topic><topic>Mice</topic><topic>Models, Biological</topic><topic>Particulate Matter - adverse effects</topic><topic>Pulmonary Fibrosis - chemically induced</topic><topic>Pulmonary Fibrosis - pathology</topic><topic>Systems biology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Brown, Bryan N.</creatorcontrib><creatorcontrib>Price, Ian M.</creatorcontrib><creatorcontrib>Toapanta, Franklin R.</creatorcontrib><creatorcontrib>DeAlmeida, Dilhari R.</creatorcontrib><creatorcontrib>Wiley, Clayton A.</creatorcontrib><creatorcontrib>Ross, Ted M.</creatorcontrib><creatorcontrib>Oury, Tim D.</creatorcontrib><creatorcontrib>Vodovotz, Yoram</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Biotechnology Research Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Mathematical biosciences</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Brown, Bryan N.</au><au>Price, Ian M.</au><au>Toapanta, Franklin R.</au><au>DeAlmeida, Dilhari R.</au><au>Wiley, Clayton A.</au><au>Ross, Ted M.</au><au>Oury, Tim D.</au><au>Vodovotz, Yoram</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>An agent-based model of inflammation and fibrosis following particulate exposure in the lung</atitle><jtitle>Mathematical biosciences</jtitle><addtitle>Math Biosci</addtitle><date>2011-06-01</date><risdate>2011</risdate><volume>231</volume><issue>2</issue><spage>186</spage><epage>196</epage><pages>186-196</pages><issn>0025-5564</issn><eissn>1879-3134</eissn><abstract>Inflammation and airway remodeling occur in a variety of airway diseases. Modeling aspects of the inflammatory and fibrotic processes following repeated exposure to particulate matter may provide insights into a spectrum of airway diseases, as well as prevention/treatment strategies. An agent-based model (ABM) was created to examine the response of an abstracted population of inflammatory cells (nominally macrophages, but possibly including other inflammatory cells such as lymphocytes) and cells involved in remodeling (nominally fibroblasts) to particulate exposure. The model focused on a limited number of relevant interactions, specifically those among macrophages, fibroblasts, a pro-inflammatory cytokine (TNF-α), an anti-inflammatory cytokine (TGF-β1), collagen deposition, and tissue damage. The model yielded three distinct states that were equated with (1) self-resolving inflammation and a return to baseline, (2) a pro-inflammatory process of localized tissue damage and fibrosis, and (3) elevated pro- and anti-inflammatory cytokines, persistent tissue damage, and fibrosis outcomes. Experimental results consistent with these predicted states were observed in histology sections of lung tissue from mice exposed to particulate matter. Systematic
in silico studies suggested that the development of each state depended primarily upon the degree and duration of exposure. Thus, a relatively simple ABM resulted in several, biologically feasible, emergent states, suggesting that the model captures certain salient features of inflammation following exposure of the lung to particulate matter. This ABM may hold future utility in the setting of airway disease resulting from inflammation and fibrosis following particulate exposure.</abstract><cop>United States</cop><pub>Elsevier Inc</pub><pmid>21385589</pmid><doi>10.1016/j.mbs.2011.03.005</doi><tpages>11</tpages><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
identifier | ISSN: 0025-5564 |
ispartof | Mathematical biosciences, 2011-06, Vol.231 (2), p.186-196 |
issn | 0025-5564 1879-3134 |
language | eng |
recordid | cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_3088650 |
source | ScienceDirect Journals; Backfile Package - Mathematics (Legacy) [YMT] |
subjects | Agent-based model Animal models Animals Computer Simulation Fibrosis Inflammation - chemically induced Inflammation - pathology Lung Lung Diseases - chemically induced Lung Diseases - pathology Mice Models, Biological Particulate Matter - adverse effects Pulmonary Fibrosis - chemically induced Pulmonary Fibrosis - pathology Systems biology |
title | An agent-based model of inflammation and fibrosis following particulate exposure in the lung |
url | http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-09T20%3A48%3A52IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=An%20agent-based%20model%20of%20inflammation%20and%20fibrosis%20following%20particulate%20exposure%20in%20the%20lung&rft.jtitle=Mathematical%20biosciences&rft.au=Brown,%20Bryan%20N.&rft.date=2011-06-01&rft.volume=231&rft.issue=2&rft.spage=186&rft.epage=196&rft.pages=186-196&rft.issn=0025-5564&rft.eissn=1879-3134&rft_id=info:doi/10.1016/j.mbs.2011.03.005&rft_dat=%3Cproquest_pubme%3E874181963%3C/proquest_pubme%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c482t-601d9a1c1a49ae76c107521b5e07e1b22cb22820fb21bf6725b114ef557b9bb33%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_pqid=874181963&rft_id=info:pmid/21385589&rfr_iscdi=true |