Rice transposable elements: a survey of 73,000 sequence-tagged-connectors

As part of an international effort to sequence the rice genome, the Clemson University Genomics Institute is developing a sequence-tagged-connector (STC) framework. This framework includes the generation of deep-coverage BAC libraries from O. sativa ssp. japonica c.v. Nipponbare and the sequencing o...

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Bibliographic Details
Published in:Genome research 2000-07, Vol.10 (7), p.982-990
Main Authors: Mao, L, Wood, T C, Yu, Y, Budiman, M A, Tomkins, J, Woo, S, Sasinowski, M, Presting, G, Frisch, D, Goff, S, Dean, R A, Wing, R A
Format: Article
Language:English
Subjects:
Arabidopsis - genetics
Capsid - genetics
Carrier Proteins - genetics
Chromosomes, Bacterial - genetics
DNA Transposable Elements - genetics
DNA, Plant - genetics
DNA-Binding Proteins - genetics
Gene Library
Genes, Plant
Genome, Plant
Letter
Multigene Family - genetics
Nicotiana - genetics
Oryza - genetics
Physical Chromosome Mapping
Plant Proteins
Plant Viruses - genetics
Plants, Toxic
Repetitive Sequences, Nucleic Acid - genetics
Sequence Homology, Nucleic Acid
Sequence Tagged Sites
Transposases
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Summary:As part of an international effort to sequence the rice genome, the Clemson University Genomics Institute is developing a sequence-tagged-connector (STC) framework. This framework includes the generation of deep-coverage BAC libraries from O. sativa ssp. japonica c.v. Nipponbare and the sequencing of both ends of the genomic DNA insert of the BAC clones. Here, we report a survey of the transposable elements (TE) in >73,000 STCs. A total of 6848 STCs were found homologous to regions of known TE sequences (E
ISSN:1088-9051
1549-5469
DOI:10.1101/gr.10.7.982