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Acid phosphatase test proves superior to standard phenotypic identification procedure for Clostridium perfringens strains isolated from water
Clostridium perfringens is used as an indicator for persistent faecal pollution as well as to monitor the efficacy of water treatment processes. For these purposes, differentiation between C. perfringens and other Clostridia is essential and is routinely carried out by phenotypic standard tests as p...
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Published in: | Journal of microbiological methods 2011-11, Vol.87 (2), p.189-194 |
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description | Clostridium perfringens is used as an indicator for persistent faecal pollution as well as to monitor the efficacy of water treatment processes. For these purposes, differentiation between C. perfringens and other Clostridia is essential and is routinely carried out by phenotypic standard tests as proposed in the ISO/CD 6461-2:2002 (ISO_LGMN: lactose fermentation, gelatine liquidation, motility and nitrate reduction). Because the ISO_LGMN procedure is time consuming and labour intensive, the acid phosphatase test was investigated as a possible and much more rapid alternative method for confirmation. The aim of our study was to evaluate and compare confirmation results obtained by these two phenotypic methods using genotypically identified strains, what to our knowledge has not been accomplished before. For this purpose, a species specific PCR method was selected based on the results received for type strains and genotypically characterised environmental strains. For the comparative investigation type strains as well as presumptive C. perfringens isolates from water and faeces samples were used. The acid phosphatase test revealed higher percentage (92%) of correctly identified environmental strains (n=127) than the ISO_LGMN procedure (83%) and proved to be a sensitive and reliable confirmation method.
► The identification of Clostridium perfringens by routine phenotypic standard tests is very time consuming. ► We investigated acid phosphatase test as a possible and much more rapid alternative method. ► Evaluation was performed on type strains and genotypically identified isolates of water and faeces. ► The new confirmation method proved to be sensitive, reliable and feasible. ► It will help to enhance the quality of C. perfringens identification in water quality monitoring. |
doi_str_mv | 10.1016/j.mimet.2011.08.006 |
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► The identification of Clostridium perfringens by routine phenotypic standard tests is very time consuming. ► We investigated acid phosphatase test as a possible and much more rapid alternative method. ► Evaluation was performed on type strains and genotypically identified isolates of water and faeces. ► The new confirmation method proved to be sensitive, reliable and feasible. ► It will help to enhance the quality of C. perfringens identification in water quality monitoring.</description><identifier>ISSN: 0167-7012</identifier><identifier>EISSN: 1872-8359</identifier><identifier>DOI: 10.1016/j.mimet.2011.08.006</identifier><identifier>PMID: 21872622</identifier><identifier>CODEN: JMIMDQ</identifier><language>eng</language><publisher>Amsterdam: Elsevier B.V</publisher><subject>acid phosphatase ; Acid Phosphatase - analysis ; Acid Phosphatase - metabolism ; Acid phosphatase test ; Bacterial Proteins - analysis ; Bacterial Proteins - metabolism ; Biological and medical sciences ; Clostridium perfringens ; Clostridium perfringens - enzymology ; Clostridium perfringens - genetics ; Clostridium perfringens - isolation & purification ; Enzyme Assays - methods ; Faecal pollution ; feces ; Feces - microbiology ; fermentation ; Fundamental and applied biological sciences. Psychology ; Gas Gangrene - diagnosis ; Gas Gangrene - microbiology ; gelatin ; Genotypic confirmation ; Humans ; labor ; lactose ; Microbiology ; nitrate reduction ; Phenotypic confirmation ; pollution ; polymerase chain reaction ; Polymerase Chain Reaction - methods ; Water ; Water Microbiology ; water treatment</subject><ispartof>Journal of microbiological methods, 2011-11, Vol.87 (2), p.189-194</ispartof><rights>2011 Elsevier B.V.</rights><rights>2015 INIST-CNRS</rights><rights>Copyright © 2011 Elsevier B.V. All rights reserved.</rights><rights>2011 Elsevier B.V. 2011 Elsevier B.V.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c544t-b015d1e607006ed3b650f78cf230f5706b764c13ec97f0d2344b392755c56bb23</citedby><cites>FETCH-LOGICAL-c544t-b015d1e607006ed3b650f78cf230f5706b764c13ec97f0d2344b392755c56bb23</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>230,314,780,784,885,27924,27925</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=24618399$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/21872622$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Ryzinska-Paier, G.</creatorcontrib><creatorcontrib>Sommer, R.</creatorcontrib><creatorcontrib>Haider, J.M.</creatorcontrib><creatorcontrib>Knetsch, S.</creatorcontrib><creatorcontrib>Frick, C.</creatorcontrib><creatorcontrib>Kirschner, A.K.T.</creatorcontrib><creatorcontrib>Farnleitner, A.H.</creatorcontrib><title>Acid phosphatase test proves superior to standard phenotypic identification procedure for Clostridium perfringens strains isolated from water</title><title>Journal of microbiological methods</title><addtitle>J Microbiol Methods</addtitle><description>Clostridium perfringens is used as an indicator for persistent faecal pollution as well as to monitor the efficacy of water treatment processes. For these purposes, differentiation between C. perfringens and other Clostridia is essential and is routinely carried out by phenotypic standard tests as proposed in the ISO/CD 6461-2:2002 (ISO_LGMN: lactose fermentation, gelatine liquidation, motility and nitrate reduction). Because the ISO_LGMN procedure is time consuming and labour intensive, the acid phosphatase test was investigated as a possible and much more rapid alternative method for confirmation. The aim of our study was to evaluate and compare confirmation results obtained by these two phenotypic methods using genotypically identified strains, what to our knowledge has not been accomplished before. For this purpose, a species specific PCR method was selected based on the results received for type strains and genotypically characterised environmental strains. For the comparative investigation type strains as well as presumptive C. perfringens isolates from water and faeces samples were used. The acid phosphatase test revealed higher percentage (92%) of correctly identified environmental strains (n=127) than the ISO_LGMN procedure (83%) and proved to be a sensitive and reliable confirmation method.
► The identification of Clostridium perfringens by routine phenotypic standard tests is very time consuming. ► We investigated acid phosphatase test as a possible and much more rapid alternative method. ► Evaluation was performed on type strains and genotypically identified isolates of water and faeces. ► The new confirmation method proved to be sensitive, reliable and feasible. ► It will help to enhance the quality of C. perfringens identification in water quality monitoring.</description><subject>acid phosphatase</subject><subject>Acid Phosphatase - analysis</subject><subject>Acid Phosphatase - metabolism</subject><subject>Acid phosphatase test</subject><subject>Bacterial Proteins - analysis</subject><subject>Bacterial Proteins - metabolism</subject><subject>Biological and medical sciences</subject><subject>Clostridium perfringens</subject><subject>Clostridium perfringens - enzymology</subject><subject>Clostridium perfringens - genetics</subject><subject>Clostridium perfringens - isolation & purification</subject><subject>Enzyme Assays - methods</subject><subject>Faecal pollution</subject><subject>feces</subject><subject>Feces - microbiology</subject><subject>fermentation</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Gas Gangrene - diagnosis</subject><subject>Gas Gangrene - microbiology</subject><subject>gelatin</subject><subject>Genotypic confirmation</subject><subject>Humans</subject><subject>labor</subject><subject>lactose</subject><subject>Microbiology</subject><subject>nitrate reduction</subject><subject>Phenotypic confirmation</subject><subject>pollution</subject><subject>polymerase chain reaction</subject><subject>Polymerase Chain Reaction - methods</subject><subject>Water</subject><subject>Water Microbiology</subject><subject>water treatment</subject><issn>0167-7012</issn><issn>1872-8359</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2011</creationdate><recordtype>article</recordtype><recordid>eNp9kU2P0zAQhiMEYsvCL0ACXxCnFn8kTnJgpVXFl7QSB9iz5djjdqokDrZTtD-C_4xDywIXTmPJz7wz77xF8ZzRDaNMvjlsBhwgbThlbEObDaXyQbFiTc3Xjajah8UqU_W6poxfFE9iPFDKKlE2j4sLvlCS81Xx49qgJdPex2mvk45AEsREpuCPEEmcJwjoA0mexKRHq8MCw-jT3YSGoIUxoUOjE_px6TJg5wDE5Z5t72MKaHEeSJZxAccdjFk0BY25YvS9TmCJC34g3_MzPC0eOd1HeHaul8Xt-3dftx_XN58_fNpe36xNVZZp3WUjloGkdfYMVnSyoq5ujOOCuqqmsqtlaZgA09aOWi7KshMtr6vKVLLruLgsrk6609wNYE12EXSvpoCDDnfKa1T__oy4Vzt_VIK1laxZFnh9Fgj-25wvpgaMBvpej-DnqFrKhSx5KTMpTqQJPsYA7n4Ko2rJUR3UrxzVkqOijcqecteLvxe87_kdXAZenQEdje5d0KPB-IcrJWtE22bu5Ylz2iu9C5m5_ZInSUqpEA0XmXh7IiAf_IgQVDQIYw4SA5ikrMf_rvoTikjK7g</recordid><startdate>20111101</startdate><enddate>20111101</enddate><creator>Ryzinska-Paier, G.</creator><creator>Sommer, R.</creator><creator>Haider, J.M.</creator><creator>Knetsch, S.</creator><creator>Frick, C.</creator><creator>Kirschner, A.K.T.</creator><creator>Farnleitner, A.H.</creator><general>Elsevier B.V</general><general>Elsevier</general><general>Elsevier Biomedical</general><scope>6I.</scope><scope>AAFTH</scope><scope>FBQ</scope><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QH</scope><scope>7QL</scope><scope>7T7</scope><scope>7UA</scope><scope>8FD</scope><scope>C1K</scope><scope>F1W</scope><scope>FR3</scope><scope>H97</scope><scope>L.G</scope><scope>P64</scope><scope>5PM</scope></search><sort><creationdate>20111101</creationdate><title>Acid phosphatase test proves superior to standard phenotypic identification procedure for Clostridium perfringens strains isolated from water</title><author>Ryzinska-Paier, G. ; Sommer, R. ; Haider, J.M. ; Knetsch, S. ; Frick, C. ; Kirschner, A.K.T. ; Farnleitner, A.H.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c544t-b015d1e607006ed3b650f78cf230f5706b764c13ec97f0d2344b392755c56bb23</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2011</creationdate><topic>acid phosphatase</topic><topic>Acid Phosphatase - analysis</topic><topic>Acid Phosphatase - metabolism</topic><topic>Acid phosphatase test</topic><topic>Bacterial Proteins - analysis</topic><topic>Bacterial Proteins - metabolism</topic><topic>Biological and medical sciences</topic><topic>Clostridium perfringens</topic><topic>Clostridium perfringens - enzymology</topic><topic>Clostridium perfringens - genetics</topic><topic>Clostridium perfringens - isolation & purification</topic><topic>Enzyme Assays - methods</topic><topic>Faecal pollution</topic><topic>feces</topic><topic>Feces - microbiology</topic><topic>fermentation</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Gas Gangrene - diagnosis</topic><topic>Gas Gangrene - microbiology</topic><topic>gelatin</topic><topic>Genotypic confirmation</topic><topic>Humans</topic><topic>labor</topic><topic>lactose</topic><topic>Microbiology</topic><topic>nitrate reduction</topic><topic>Phenotypic confirmation</topic><topic>pollution</topic><topic>polymerase chain reaction</topic><topic>Polymerase Chain Reaction - methods</topic><topic>Water</topic><topic>Water Microbiology</topic><topic>water treatment</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ryzinska-Paier, G.</creatorcontrib><creatorcontrib>Sommer, R.</creatorcontrib><creatorcontrib>Haider, J.M.</creatorcontrib><creatorcontrib>Knetsch, S.</creatorcontrib><creatorcontrib>Frick, C.</creatorcontrib><creatorcontrib>Kirschner, A.K.T.</creatorcontrib><creatorcontrib>Farnleitner, A.H.</creatorcontrib><collection>ScienceDirect Open Access Titles</collection><collection>Elsevier:ScienceDirect:Open Access</collection><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Aqualine</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Water Resources Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ASFA: Aquatic Sciences and Fisheries Abstracts</collection><collection>Engineering Research Database</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) 3: Aquatic Pollution & Environmental Quality</collection><collection>Aquatic Science & Fisheries Abstracts (ASFA) Professional</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Journal of microbiological methods</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ryzinska-Paier, G.</au><au>Sommer, R.</au><au>Haider, J.M.</au><au>Knetsch, S.</au><au>Frick, C.</au><au>Kirschner, A.K.T.</au><au>Farnleitner, A.H.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Acid phosphatase test proves superior to standard phenotypic identification procedure for Clostridium perfringens strains isolated from water</atitle><jtitle>Journal of microbiological methods</jtitle><addtitle>J Microbiol Methods</addtitle><date>2011-11-01</date><risdate>2011</risdate><volume>87</volume><issue>2</issue><spage>189</spage><epage>194</epage><pages>189-194</pages><issn>0167-7012</issn><eissn>1872-8359</eissn><coden>JMIMDQ</coden><abstract>Clostridium perfringens is used as an indicator for persistent faecal pollution as well as to monitor the efficacy of water treatment processes. For these purposes, differentiation between C. perfringens and other Clostridia is essential and is routinely carried out by phenotypic standard tests as proposed in the ISO/CD 6461-2:2002 (ISO_LGMN: lactose fermentation, gelatine liquidation, motility and nitrate reduction). Because the ISO_LGMN procedure is time consuming and labour intensive, the acid phosphatase test was investigated as a possible and much more rapid alternative method for confirmation. The aim of our study was to evaluate and compare confirmation results obtained by these two phenotypic methods using genotypically identified strains, what to our knowledge has not been accomplished before. For this purpose, a species specific PCR method was selected based on the results received for type strains and genotypically characterised environmental strains. For the comparative investigation type strains as well as presumptive C. perfringens isolates from water and faeces samples were used. The acid phosphatase test revealed higher percentage (92%) of correctly identified environmental strains (n=127) than the ISO_LGMN procedure (83%) and proved to be a sensitive and reliable confirmation method.
► The identification of Clostridium perfringens by routine phenotypic standard tests is very time consuming. ► We investigated acid phosphatase test as a possible and much more rapid alternative method. ► Evaluation was performed on type strains and genotypically identified isolates of water and faeces. ► The new confirmation method proved to be sensitive, reliable and feasible. ► It will help to enhance the quality of C. perfringens identification in water quality monitoring.</abstract><cop>Amsterdam</cop><pub>Elsevier B.V</pub><pmid>21872622</pmid><doi>10.1016/j.mimet.2011.08.006</doi><tpages>6</tpages><oa>free_for_read</oa></addata></record> |
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subjects | acid phosphatase Acid Phosphatase - analysis Acid Phosphatase - metabolism Acid phosphatase test Bacterial Proteins - analysis Bacterial Proteins - metabolism Biological and medical sciences Clostridium perfringens Clostridium perfringens - enzymology Clostridium perfringens - genetics Clostridium perfringens - isolation & purification Enzyme Assays - methods Faecal pollution feces Feces - microbiology fermentation Fundamental and applied biological sciences. Psychology Gas Gangrene - diagnosis Gas Gangrene - microbiology gelatin Genotypic confirmation Humans labor lactose Microbiology nitrate reduction Phenotypic confirmation pollution polymerase chain reaction Polymerase Chain Reaction - methods Water Water Microbiology water treatment |
title | Acid phosphatase test proves superior to standard phenotypic identification procedure for Clostridium perfringens strains isolated from water |
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