Loading…
A Fast Solution to NGS Library Prep with Low Nanogram DNA Input
Next Generation Sequencing (NGS) has significantly impacted human genetics, enabling a comprehensive characterization of the human genome as well as a better understanding of many genomic abnormalities. By delivering massive DNA sequences at unprecedented speed and cost, NGS promises to make persona...
Saved in:
Published in: | Journal of biomolecular techniques 2013-05, Vol.24 (Suppl), p.S44-S44 |
---|---|
Main Authors: | , , , , , , , , , , , , |
Format: | Article |
Language: | English |
Subjects: | |
Online Access: | Get full text |
Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
cited_by | |
---|---|
cites | |
container_end_page | S44 |
container_issue | Suppl |
container_start_page | S44 |
container_title | Journal of biomolecular techniques |
container_volume | 24 |
creator | Liu, Pingfang Lohman, Gregory J.S. Cantor, Eric Langhorst, Bradley W. Yigit, Erbay Apone, Lynne M. Munafo, Daniela B. Stewart, Fiona J. Evans, Thomas C. Nichols, Nicole Dimalanta, Eileen T. Davis, Theodore B. Sumner, Christine |
description | Next Generation Sequencing (NGS) has significantly impacted human genetics, enabling a comprehensive characterization of the human genome as well as a better understanding of many genomic abnormalities. By delivering massive DNA sequences at unprecedented speed and cost, NGS promises to make personalized medicine a reality in the foreseeable future. To date, library construction with clinical samples has been a challenge, primarily due to the limited quantities of sample DNA available. Our objective here was to overcome this challenge by developing NEBNext® Ultra DNA Library Prep Kit, a fast library preparation method. Specifically, we streamlined the workflow utilizing novel NEBNext reagents and adaptors, including a new DNA polymerase that has been optimized to minimize GC bias. As a result of this work, we have developed a simple method for library construction from an amount of DNA as low as 5 ng, which can be used for both intact and fragmented DNA. Moreover, the workflow is compatible with multiple NGS platforms. |
format | article |
fullrecord | <record><control><sourceid>pubmedcentral</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_3635320</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>pubmedcentral_primary_oai_pubmedcentral_nih_gov_3635320</sourcerecordid><originalsourceid>FETCH-pubmedcentral_primary_oai_pubmedcentral_nih_gov_36353203</originalsourceid><addsrcrecordid>eNqljE8LgjAcQEcUZH--w-8LCG7TokshlRWIBHYfs5YudJNtJn37OnTp3Ok9ePAGyMOrkPrhkuLhxyMS-gHB0RhNrH0EASGYEg9tYki4dZDrunNSK3AaskMOqSwMNy84G9FCL10Fqe4h40qXhjewy2I4qbZzMzS689qK-ZdTtE72l-3Rb7uiEberUM7wmrVGNp8d01yy36JkxUr9ZHRBI0oC-vfgDTeOTzk</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype></control><display><type>article</type><title>A Fast Solution to NGS Library Prep with Low Nanogram DNA Input</title><source>PMC (PubMed Central)</source><creator>Liu, Pingfang ; Lohman, Gregory J.S. ; Cantor, Eric ; Langhorst, Bradley W. ; Yigit, Erbay ; Apone, Lynne M. ; Munafo, Daniela B. ; Stewart, Fiona J. ; Evans, Thomas C. ; Nichols, Nicole ; Dimalanta, Eileen T. ; Davis, Theodore B. ; Sumner, Christine</creator><creatorcontrib>Liu, Pingfang ; Lohman, Gregory J.S. ; Cantor, Eric ; Langhorst, Bradley W. ; Yigit, Erbay ; Apone, Lynne M. ; Munafo, Daniela B. ; Stewart, Fiona J. ; Evans, Thomas C. ; Nichols, Nicole ; Dimalanta, Eileen T. ; Davis, Theodore B. ; Sumner, Christine</creatorcontrib><description>Next Generation Sequencing (NGS) has significantly impacted human genetics, enabling a comprehensive characterization of the human genome as well as a better understanding of many genomic abnormalities. By delivering massive DNA sequences at unprecedented speed and cost, NGS promises to make personalized medicine a reality in the foreseeable future. To date, library construction with clinical samples has been a challenge, primarily due to the limited quantities of sample DNA available. Our objective here was to overcome this challenge by developing NEBNext® Ultra DNA Library Prep Kit, a fast library preparation method. Specifically, we streamlined the workflow utilizing novel NEBNext reagents and adaptors, including a new DNA polymerase that has been optimized to minimize GC bias. As a result of this work, we have developed a simple method for library construction from an amount of DNA as low as 5 ng, which can be used for both intact and fragmented DNA. Moreover, the workflow is compatible with multiple NGS platforms.</description><identifier>ISSN: 1524-0215</identifier><identifier>EISSN: 1943-4731</identifier><language>eng</language><publisher>Bethesda, MD: Association of Biomolecular Resource Facilities</publisher><subject>Poster Session Abstracts</subject><ispartof>Journal of biomolecular techniques, 2013-05, Vol.24 (Suppl), p.S44-S44</ispartof><rights>2013 Association of Biomolecular Resource Facilities 2013</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3635320/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3635320/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,727,780,784,885,53791,53793</link.rule.ids></links><search><creatorcontrib>Liu, Pingfang</creatorcontrib><creatorcontrib>Lohman, Gregory J.S.</creatorcontrib><creatorcontrib>Cantor, Eric</creatorcontrib><creatorcontrib>Langhorst, Bradley W.</creatorcontrib><creatorcontrib>Yigit, Erbay</creatorcontrib><creatorcontrib>Apone, Lynne M.</creatorcontrib><creatorcontrib>Munafo, Daniela B.</creatorcontrib><creatorcontrib>Stewart, Fiona J.</creatorcontrib><creatorcontrib>Evans, Thomas C.</creatorcontrib><creatorcontrib>Nichols, Nicole</creatorcontrib><creatorcontrib>Dimalanta, Eileen T.</creatorcontrib><creatorcontrib>Davis, Theodore B.</creatorcontrib><creatorcontrib>Sumner, Christine</creatorcontrib><title>A Fast Solution to NGS Library Prep with Low Nanogram DNA Input</title><title>Journal of biomolecular techniques</title><description>Next Generation Sequencing (NGS) has significantly impacted human genetics, enabling a comprehensive characterization of the human genome as well as a better understanding of many genomic abnormalities. By delivering massive DNA sequences at unprecedented speed and cost, NGS promises to make personalized medicine a reality in the foreseeable future. To date, library construction with clinical samples has been a challenge, primarily due to the limited quantities of sample DNA available. Our objective here was to overcome this challenge by developing NEBNext® Ultra DNA Library Prep Kit, a fast library preparation method. Specifically, we streamlined the workflow utilizing novel NEBNext reagents and adaptors, including a new DNA polymerase that has been optimized to minimize GC bias. As a result of this work, we have developed a simple method for library construction from an amount of DNA as low as 5 ng, which can be used for both intact and fragmented DNA. Moreover, the workflow is compatible with multiple NGS platforms.</description><subject>Poster Session Abstracts</subject><issn>1524-0215</issn><issn>1943-4731</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2013</creationdate><recordtype>article</recordtype><recordid>eNqljE8LgjAcQEcUZH--w-8LCG7TokshlRWIBHYfs5YudJNtJn37OnTp3Ok9ePAGyMOrkPrhkuLhxyMS-gHB0RhNrH0EASGYEg9tYki4dZDrunNSK3AaskMOqSwMNy84G9FCL10Fqe4h40qXhjewy2I4qbZzMzS689qK-ZdTtE72l-3Rb7uiEberUM7wmrVGNp8d01yy36JkxUr9ZHRBI0oC-vfgDTeOTzk</recordid><startdate>20130501</startdate><enddate>20130501</enddate><creator>Liu, Pingfang</creator><creator>Lohman, Gregory J.S.</creator><creator>Cantor, Eric</creator><creator>Langhorst, Bradley W.</creator><creator>Yigit, Erbay</creator><creator>Apone, Lynne M.</creator><creator>Munafo, Daniela B.</creator><creator>Stewart, Fiona J.</creator><creator>Evans, Thomas C.</creator><creator>Nichols, Nicole</creator><creator>Dimalanta, Eileen T.</creator><creator>Davis, Theodore B.</creator><creator>Sumner, Christine</creator><general>Association of Biomolecular Resource Facilities</general><scope>5PM</scope></search><sort><creationdate>20130501</creationdate><title>A Fast Solution to NGS Library Prep with Low Nanogram DNA Input</title><author>Liu, Pingfang ; Lohman, Gregory J.S. ; Cantor, Eric ; Langhorst, Bradley W. ; Yigit, Erbay ; Apone, Lynne M. ; Munafo, Daniela B. ; Stewart, Fiona J. ; Evans, Thomas C. ; Nichols, Nicole ; Dimalanta, Eileen T. ; Davis, Theodore B. ; Sumner, Christine</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-pubmedcentral_primary_oai_pubmedcentral_nih_gov_36353203</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2013</creationdate><topic>Poster Session Abstracts</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Liu, Pingfang</creatorcontrib><creatorcontrib>Lohman, Gregory J.S.</creatorcontrib><creatorcontrib>Cantor, Eric</creatorcontrib><creatorcontrib>Langhorst, Bradley W.</creatorcontrib><creatorcontrib>Yigit, Erbay</creatorcontrib><creatorcontrib>Apone, Lynne M.</creatorcontrib><creatorcontrib>Munafo, Daniela B.</creatorcontrib><creatorcontrib>Stewart, Fiona J.</creatorcontrib><creatorcontrib>Evans, Thomas C.</creatorcontrib><creatorcontrib>Nichols, Nicole</creatorcontrib><creatorcontrib>Dimalanta, Eileen T.</creatorcontrib><creatorcontrib>Davis, Theodore B.</creatorcontrib><creatorcontrib>Sumner, Christine</creatorcontrib><collection>PubMed Central (Full Participant titles)</collection><jtitle>Journal of biomolecular techniques</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Liu, Pingfang</au><au>Lohman, Gregory J.S.</au><au>Cantor, Eric</au><au>Langhorst, Bradley W.</au><au>Yigit, Erbay</au><au>Apone, Lynne M.</au><au>Munafo, Daniela B.</au><au>Stewart, Fiona J.</au><au>Evans, Thomas C.</au><au>Nichols, Nicole</au><au>Dimalanta, Eileen T.</au><au>Davis, Theodore B.</au><au>Sumner, Christine</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A Fast Solution to NGS Library Prep with Low Nanogram DNA Input</atitle><jtitle>Journal of biomolecular techniques</jtitle><date>2013-05-01</date><risdate>2013</risdate><volume>24</volume><issue>Suppl</issue><spage>S44</spage><epage>S44</epage><pages>S44-S44</pages><issn>1524-0215</issn><eissn>1943-4731</eissn><abstract>Next Generation Sequencing (NGS) has significantly impacted human genetics, enabling a comprehensive characterization of the human genome as well as a better understanding of many genomic abnormalities. By delivering massive DNA sequences at unprecedented speed and cost, NGS promises to make personalized medicine a reality in the foreseeable future. To date, library construction with clinical samples has been a challenge, primarily due to the limited quantities of sample DNA available. Our objective here was to overcome this challenge by developing NEBNext® Ultra DNA Library Prep Kit, a fast library preparation method. Specifically, we streamlined the workflow utilizing novel NEBNext reagents and adaptors, including a new DNA polymerase that has been optimized to minimize GC bias. As a result of this work, we have developed a simple method for library construction from an amount of DNA as low as 5 ng, which can be used for both intact and fragmented DNA. Moreover, the workflow is compatible with multiple NGS platforms.</abstract><cop>Bethesda, MD</cop><pub>Association of Biomolecular Resource Facilities</pub></addata></record> |
fulltext | fulltext |
identifier | ISSN: 1524-0215 |
ispartof | Journal of biomolecular techniques, 2013-05, Vol.24 (Suppl), p.S44-S44 |
issn | 1524-0215 1943-4731 |
language | eng |
recordid | cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_3635320 |
source | PMC (PubMed Central) |
subjects | Poster Session Abstracts |
title | A Fast Solution to NGS Library Prep with Low Nanogram DNA Input |
url | http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-07T20%3A40%3A44IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-pubmedcentral&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=A%20Fast%20Solution%20to%20NGS%20Library%20Prep%20with%20Low%20Nanogram%20DNA%20Input&rft.jtitle=Journal%20of%20biomolecular%20techniques&rft.au=Liu,%20Pingfang&rft.date=2013-05-01&rft.volume=24&rft.issue=Suppl&rft.spage=S44&rft.epage=S44&rft.pages=S44-S44&rft.issn=1524-0215&rft.eissn=1943-4731&rft_id=info:doi/&rft_dat=%3Cpubmedcentral%3Epubmedcentral_primary_oai_pubmedcentral_nih_gov_3635320%3C/pubmedcentral%3E%3Cgrp_id%3Ecdi_FETCH-pubmedcentral_primary_oai_pubmedcentral_nih_gov_36353203%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_id=info:pmid/&rfr_iscdi=true |