RegaDB: community-driven data management and analysis for infectious diseases

RegaDB is a free and open source data management and analysis environment for infectious diseases. RegaDB allows clinicians to store, manage and analyse patient data, including viral genetic sequences. Moreover, RegaDB provides researchers with a mechanism to collect data in a uniform format and off...

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Bibliographic Details
Published in:Bioinformatics 2013-06, Vol.29 (11), p.1477-1480
Main Authors: Libin, Pieter, Beheydt, Gertjan, Deforche, Koen, Imbrechts, Stijn, Ferreira, Fossie, Van Laethem, Kristel, Theys, Kristof, Carvalho, Ana Patricia, Cavaco-Silva, Joana, Lapadula, Giuseppe, Torti, Carlo, Assel, Matthias, Wesner, Stefan, Snoeck, Joke, Ruelle, Jean, De Bel, Annelies, Lacor, Patrick, De Munter, Paul, Van Wijngaerden, Eric, Zazzi, Maurizio, Kaiser, Rolf, Ayouba, Ahidjo, Peeters, Martine, de Oliveira, Tulio, Alcantara, Luiz C J, Grossman, Zehava, Sloot, Peter, Otelea, Dan, Paraschiv, Simona, Boucher, Charles, Camacho, Ricardo J, Vandamme, Anne-Mieke
Format: Article
Language:English
Subjects:
Applications Notes
Database Management Systems
Databases, Factual
Humans
Software
Virus Diseases - diagnosis
Virus Diseases - therapy
Virus Diseases - virology
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Description
Summary:RegaDB is a free and open source data management and analysis environment for infectious diseases. RegaDB allows clinicians to store, manage and analyse patient data, including viral genetic sequences. Moreover, RegaDB provides researchers with a mechanism to collect data in a uniform format and offers them a canvas to make newly developed bioinformatics tools available to clinicians and virologists through a user friendly interface. Source code, binaries and documentation are available on http://rega.kuleuven.be/cev/regadb. RegaDB is written in the Java programming language, using a web-service-oriented architecture.
ISSN:1367-4803
1367-4811
1460-2059
DOI:10.1093/bioinformatics/btt162