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Structural basis for termination of AIM2-mediated signaling by p202

Sighting and binding of double-stranded DNA (ds- DNA) by a sensor in the cytoplasm trigger the activation of the immune-surveillance pathways [1]. The crystal structure of absent in melanoma 2 (AIM2) bound with DNA conclusively defines the role of AIM2 as a sensor in the innate immune system [2]. AI...

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Published in:Cell research 2013-06, Vol.23 (6), p.855-858
Main Authors: Ru, Heng, Ni, Xiangmin, Zhao, Lixia, Crowley, Christopher, Ding, Wei, Hung, Li-Wei, Shaw, Neil, Cheng, Genhong, Liu, Zhi-Jie
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creator Ru, Heng
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Zhao, Lixia
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Hung, Li-Wei
Shaw, Neil
Cheng, Genhong
Liu, Zhi-Jie
description Sighting and binding of double-stranded DNA (ds- DNA) by a sensor in the cytoplasm trigger the activation of the immune-surveillance pathways [1]. The crystal structure of absent in melanoma 2 (AIM2) bound with DNA conclusively defines the role of AIM2 as a sensor in the innate immune system [2]. AIM2 belongs to the PYHIN family of proteins and contains a pyrin domain (PYD) followed by a hematopoietic interferon-inducible nuclear protein (HIN) domain (Figure 1A). AIM2 binds DNA via the HIN domain and recruits the adaptor pro- tein apoptosis-associated speck-like protein containing a caspase recruitment domain (ASC) via the PYD. ASC in turn recruits caspase-1 via CARD-CARD interaction, resulting in the formation of inflammasomes comprised of AIM2, ASC and caspase-1. The molecular crowding of the AIM2 inflammasome ensures the proteolysis and transactivation of caspase-1. Activated caspase-1 cleaves pro-IL-1 ]3 and pro-IL-18 into their mature proinflamma- tory forms [3, 4]. The termination of inflammatory responses originated from inflammasomes can be accomplished by employing naturally occurring dominant-negative antagonists [4]. Dominant-negative proteins are similar to their canoni- cal counterparts except for a missing effector domain, so that they cannot relay the signals any further. They out- compete their canonical counterparts for ligands or bind- ing sites and thus block the downstream signal transduc- tion. Such regulation is essential for maintaining cellular homeostasis. To regulate inflammasome activation, mice have evolved a strategy that has so far not been discov- ered in humans. Mice use the H1N-only protein, p202, to sequester cytoplasmic dsDNA and render it unavailable for its canonical sensor, AIM2 [4]. p202 contains two HIN domains (HINa and H1Nb), but lacks the PYD (Fig- ure 1A). Therefore, p202 is unable to recruit the adaptor ASC, and its binding to DNA results in the termination of inflammasome signaling. The significance of p202 in the regulation of the innate immune responses is exem- plified by the fact that dysregulation of p202 function hasbeen linked to increased susceptibility to systemic lupus erythematosus [5]. To more clearly understand the mechanism of inhibi- tion of AIM2-mediated signaling by p202, it is essential to solve the structure of p202 in complex with DNA and compare it with that of AIM2 complexed with DNA. p202 has so far only been detected in mice. To compare the structure of AIM2 and p202 from the same specie
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The crystal structure of absent in melanoma 2 (AIM2) bound with DNA conclusively defines the role of AIM2 as a sensor in the innate immune system [2]. AIM2 belongs to the PYHIN family of proteins and contains a pyrin domain (PYD) followed by a hematopoietic interferon-inducible nuclear protein (HIN) domain (Figure 1A). AIM2 binds DNA via the HIN domain and recruits the adaptor pro- tein apoptosis-associated speck-like protein containing a caspase recruitment domain (ASC) via the PYD. ASC in turn recruits caspase-1 via CARD-CARD interaction, resulting in the formation of inflammasomes comprised of AIM2, ASC and caspase-1. The molecular crowding of the AIM2 inflammasome ensures the proteolysis and transactivation of caspase-1. Activated caspase-1 cleaves pro-IL-1 ]3 and pro-IL-18 into their mature proinflamma- tory forms [3, 4]. The termination of inflammatory responses originated from inflammasomes can be accomplished by employing naturally occurring dominant-negative antagonists [4]. Dominant-negative proteins are similar to their canoni- cal counterparts except for a missing effector domain, so that they cannot relay the signals any further. They out- compete their canonical counterparts for ligands or bind- ing sites and thus block the downstream signal transduc- tion. Such regulation is essential for maintaining cellular homeostasis. To regulate inflammasome activation, mice have evolved a strategy that has so far not been discov- ered in humans. Mice use the H1N-only protein, p202, to sequester cytoplasmic dsDNA and render it unavailable for its canonical sensor, AIM2 [4]. p202 contains two HIN domains (HINa and H1Nb), but lacks the PYD (Fig- ure 1A). Therefore, p202 is unable to recruit the adaptor ASC, and its binding to DNA results in the termination of inflammasome signaling. The significance of p202 in the regulation of the innate immune responses is exem- plified by the fact that dysregulation of p202 function hasbeen linked to increased susceptibility to systemic lupus erythematosus [5]. To more clearly understand the mechanism of inhibi- tion of AIM2-mediated signaling by p202, it is essential to solve the structure of p202 in complex with DNA and compare it with that of AIM2 complexed with DNA. p202 has so far only been detected in mice. To compare the structure of AIM2 and p202 from the same species, we first solved the structure of the H1N domain of mu- rine AIM2 (mAIM2) in complex with dsDNA to 2.23 A resolution (Supplementary information, Table S1). Although a 12-base pair (bp) long dsDNA was used for the crystallization, the HIN domain of mAIM2 seems to have lined up the DNA oligonucleotides end to end, gen- erating an appearance of a long and contiguous stretch of B-form DNA with putative major and minor grooves. As expected, the overall structure of the H1N domain of mAIM2 (Figure 1B) closely mirrors the structure of its human counterpart [2] (Supplementary information, Fig- ure S 1). Minor deviations are observed at the N-terminus and in the loop regions. The surface electrostatic poten- tial distribution is similar, implying that the mechanism of tethering dsDNA is similar between human and mouse AIM2. The HIN domain of AIM2 consists of two oligonucle- otide/oligosaccharide (OB) folds [6] linked via a flexible linker (Figure 1B). The proximal and distal OB folds are referred to as OB1 and OB2, respectively. Similar to the human ortholog, mAIM2 uses the helix-loop-helix motif located in the linker to engage DNA (Figure 1C). Specifically, a short helix containing two turns is inserted horizontally to the vertical axis of the DNA spiral (Figure 1C). Amino acids from the loop connecting helices ul and a2, and from helix ct2 interact with the major groove (Figure 1C). A couple of interactions between OB2 and the DNA backbone are also observed. Residues N244, N245, K248, R249, R251, R255, K258, 0262 K273,</description><identifier>ISSN: 1001-0602</identifier><identifier>EISSN: 1748-7838</identifier><identifier>DOI: 10.1038/cr.2013.52</identifier><identifier>PMID: 23567559</identifier><language>eng</language><publisher>London: Nature Publishing Group UK</publisher><subject>631/250/256/2177 ; 631/45/147 ; 631/535 ; 631/80/86 ; Amino Acid Sequence ; Animals ; Biomedical and Life Sciences ; caspase ; Caspase 1 - metabolism ; Cell Biology ; Crystallography, X-Ray ; DNA-Binding Proteins - metabolism ; Enzyme Activation ; Intracellular Signaling Peptides and Proteins - metabolism ; Letter to the Editor ; Life Sciences ; Mice ; Nuclear Proteins - metabolism ; Nuclear Proteins - ultrastructure ; Protein Structure, Tertiary ; Sequence Alignment ; Signal Transduction ; 介导 ; 信号转导机制 ; 双链DNA ; 系统性红斑狼疮 ; 结构基础 ; 蛋白质家族 ; 螺旋结构</subject><ispartof>Cell research, 2013-06, Vol.23 (6), p.855-858</ispartof><rights>Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences 2013</rights><rights>Copyright Nature Publishing Group Jun 2013</rights><rights>Copyright © 2013 Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences 2013 Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c534t-9f88ffa84174568ee2db53d3cdbfd26a2071de4b0ceefee3bf994164738052b03</citedby><cites>FETCH-LOGICAL-c534t-9f88ffa84174568ee2db53d3cdbfd26a2071de4b0ceefee3bf994164738052b03</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Uhttp://image.cqvip.com/vip1000/qk/85240X/85240X.jpg</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3674390/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC3674390/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,727,780,784,885,27924,27925,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/23567559$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Ru, Heng</creatorcontrib><creatorcontrib>Ni, Xiangmin</creatorcontrib><creatorcontrib>Zhao, Lixia</creatorcontrib><creatorcontrib>Crowley, Christopher</creatorcontrib><creatorcontrib>Ding, Wei</creatorcontrib><creatorcontrib>Hung, Li-Wei</creatorcontrib><creatorcontrib>Shaw, Neil</creatorcontrib><creatorcontrib>Cheng, Genhong</creatorcontrib><creatorcontrib>Liu, Zhi-Jie</creatorcontrib><title>Structural basis for termination of AIM2-mediated signaling by p202</title><title>Cell research</title><addtitle>Cell Res</addtitle><addtitle>Cell Research</addtitle><description>Sighting and binding of double-stranded DNA (ds- DNA) by a sensor in the cytoplasm trigger the activation of the immune-surveillance pathways [1]. The crystal structure of absent in melanoma 2 (AIM2) bound with DNA conclusively defines the role of AIM2 as a sensor in the innate immune system [2]. AIM2 belongs to the PYHIN family of proteins and contains a pyrin domain (PYD) followed by a hematopoietic interferon-inducible nuclear protein (HIN) domain (Figure 1A). AIM2 binds DNA via the HIN domain and recruits the adaptor pro- tein apoptosis-associated speck-like protein containing a caspase recruitment domain (ASC) via the PYD. ASC in turn recruits caspase-1 via CARD-CARD interaction, resulting in the formation of inflammasomes comprised of AIM2, ASC and caspase-1. The molecular crowding of the AIM2 inflammasome ensures the proteolysis and transactivation of caspase-1. Activated caspase-1 cleaves pro-IL-1 ]3 and pro-IL-18 into their mature proinflamma- tory forms [3, 4]. The termination of inflammatory responses originated from inflammasomes can be accomplished by employing naturally occurring dominant-negative antagonists [4]. Dominant-negative proteins are similar to their canoni- cal counterparts except for a missing effector domain, so that they cannot relay the signals any further. They out- compete their canonical counterparts for ligands or bind- ing sites and thus block the downstream signal transduc- tion. Such regulation is essential for maintaining cellular homeostasis. To regulate inflammasome activation, mice have evolved a strategy that has so far not been discov- ered in humans. Mice use the H1N-only protein, p202, to sequester cytoplasmic dsDNA and render it unavailable for its canonical sensor, AIM2 [4]. p202 contains two HIN domains (HINa and H1Nb), but lacks the PYD (Fig- ure 1A). Therefore, p202 is unable to recruit the adaptor ASC, and its binding to DNA results in the termination of inflammasome signaling. The significance of p202 in the regulation of the innate immune responses is exem- plified by the fact that dysregulation of p202 function hasbeen linked to increased susceptibility to systemic lupus erythematosus [5]. To more clearly understand the mechanism of inhibi- tion of AIM2-mediated signaling by p202, it is essential to solve the structure of p202 in complex with DNA and compare it with that of AIM2 complexed with DNA. p202 has so far only been detected in mice. To compare the structure of AIM2 and p202 from the same species, we first solved the structure of the H1N domain of mu- rine AIM2 (mAIM2) in complex with dsDNA to 2.23 A resolution (Supplementary information, Table S1). Although a 12-base pair (bp) long dsDNA was used for the crystallization, the HIN domain of mAIM2 seems to have lined up the DNA oligonucleotides end to end, gen- erating an appearance of a long and contiguous stretch of B-form DNA with putative major and minor grooves. As expected, the overall structure of the H1N domain of mAIM2 (Figure 1B) closely mirrors the structure of its human counterpart [2] (Supplementary information, Fig- ure S 1). Minor deviations are observed at the N-terminus and in the loop regions. The surface electrostatic poten- tial distribution is similar, implying that the mechanism of tethering dsDNA is similar between human and mouse AIM2. The HIN domain of AIM2 consists of two oligonucle- otide/oligosaccharide (OB) folds [6] linked via a flexible linker (Figure 1B). The proximal and distal OB folds are referred to as OB1 and OB2, respectively. Similar to the human ortholog, mAIM2 uses the helix-loop-helix motif located in the linker to engage DNA (Figure 1C). Specifically, a short helix containing two turns is inserted horizontally to the vertical axis of the DNA spiral (Figure 1C). Amino acids from the loop connecting helices ul and a2, and from helix ct2 interact with the major groove (Figure 1C). A couple of interactions between OB2 and the DNA backbone are also observed. 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The crystal structure of absent in melanoma 2 (AIM2) bound with DNA conclusively defines the role of AIM2 as a sensor in the innate immune system [2]. AIM2 belongs to the PYHIN family of proteins and contains a pyrin domain (PYD) followed by a hematopoietic interferon-inducible nuclear protein (HIN) domain (Figure 1A). AIM2 binds DNA via the HIN domain and recruits the adaptor pro- tein apoptosis-associated speck-like protein containing a caspase recruitment domain (ASC) via the PYD. ASC in turn recruits caspase-1 via CARD-CARD interaction, resulting in the formation of inflammasomes comprised of AIM2, ASC and caspase-1. The molecular crowding of the AIM2 inflammasome ensures the proteolysis and transactivation of caspase-1. Activated caspase-1 cleaves pro-IL-1 ]3 and pro-IL-18 into their mature proinflamma- tory forms [3, 4]. The termination of inflammatory responses originated from inflammasomes can be accomplished by employing naturally occurring dominant-negative antagonists [4]. Dominant-negative proteins are similar to their canoni- cal counterparts except for a missing effector domain, so that they cannot relay the signals any further. They out- compete their canonical counterparts for ligands or bind- ing sites and thus block the downstream signal transduc- tion. Such regulation is essential for maintaining cellular homeostasis. To regulate inflammasome activation, mice have evolved a strategy that has so far not been discov- ered in humans. Mice use the H1N-only protein, p202, to sequester cytoplasmic dsDNA and render it unavailable for its canonical sensor, AIM2 [4]. p202 contains two HIN domains (HINa and H1Nb), but lacks the PYD (Fig- ure 1A). Therefore, p202 is unable to recruit the adaptor ASC, and its binding to DNA results in the termination of inflammasome signaling. The significance of p202 in the regulation of the innate immune responses is exem- plified by the fact that dysregulation of p202 function hasbeen linked to increased susceptibility to systemic lupus erythematosus [5]. To more clearly understand the mechanism of inhibi- tion of AIM2-mediated signaling by p202, it is essential to solve the structure of p202 in complex with DNA and compare it with that of AIM2 complexed with DNA. p202 has so far only been detected in mice. To compare the structure of AIM2 and p202 from the same species, we first solved the structure of the H1N domain of mu- rine AIM2 (mAIM2) in complex with dsDNA to 2.23 A resolution (Supplementary information, Table S1). Although a 12-base pair (bp) long dsDNA was used for the crystallization, the HIN domain of mAIM2 seems to have lined up the DNA oligonucleotides end to end, gen- erating an appearance of a long and contiguous stretch of B-form DNA with putative major and minor grooves. As expected, the overall structure of the H1N domain of mAIM2 (Figure 1B) closely mirrors the structure of its human counterpart [2] (Supplementary information, Fig- ure S 1). Minor deviations are observed at the N-terminus and in the loop regions. The surface electrostatic poten- tial distribution is similar, implying that the mechanism of tethering dsDNA is similar between human and mouse AIM2. The HIN domain of AIM2 consists of two oligonucle- otide/oligosaccharide (OB) folds [6] linked via a flexible linker (Figure 1B). The proximal and distal OB folds are referred to as OB1 and OB2, respectively. Similar to the human ortholog, mAIM2 uses the helix-loop-helix motif located in the linker to engage DNA (Figure 1C). Specifically, a short helix containing two turns is inserted horizontally to the vertical axis of the DNA spiral (Figure 1C). Amino acids from the loop connecting helices ul and a2, and from helix ct2 interact with the major groove (Figure 1C). A couple of interactions between OB2 and the DNA backbone are also observed. Residues N244, N245, K248, R249, R251, R255, K258, 0262 K273,</abstract><cop>London</cop><pub>Nature Publishing Group UK</pub><pmid>23567559</pmid><doi>10.1038/cr.2013.52</doi><tpages>4</tpages><oa>free_for_read</oa></addata></record>
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identifier ISSN: 1001-0602
ispartof Cell research, 2013-06, Vol.23 (6), p.855-858
issn 1001-0602
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language eng
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source PubMed Central
subjects 631/250/256/2177
631/45/147
631/535
631/80/86
Amino Acid Sequence
Animals
Biomedical and Life Sciences
caspase
Caspase 1 - metabolism
Cell Biology
Crystallography, X-Ray
DNA-Binding Proteins - metabolism
Enzyme Activation
Intracellular Signaling Peptides and Proteins - metabolism
Letter to the Editor
Life Sciences
Mice
Nuclear Proteins - metabolism
Nuclear Proteins - ultrastructure
Protein Structure, Tertiary
Sequence Alignment
Signal Transduction
介导
信号转导机制
双链DNA
系统性红斑狼疮
结构基础
蛋白质家族
螺旋结构
title Structural basis for termination of AIM2-mediated signaling by p202
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