Intra-crystalline protein diagenesis (IcPD) in Patella vulgata. Part II: Breakdown and temperature sensitivity

• Published in: Quaternary geochronology 2013-04, Vol.16 (100), p.158-172
• Main Authors: Demarchi, B., Collins, M.J., Tomiak, P.J., Davies, B.J., Penkman, K.E.H.
• Format: Article
• Language: English
• Subjects: High-temperature experiments; Intra-crystalline proteins; Kinetic parameters; Patella vulgata; Research Paper; Temperature sensitivity
• ISSN: 1871-1014; 1878-0350
• DOI: 10.1016/j.quageo.2012.08.001

Artificial diagenesis of the intra-crystalline proteins isolated from Patella vulgata was induced by isothermal heating at 140 °C, 110 °C and 80 °C. Protein breakdown was quantified for multiple amino acids, measuring the extent of peptide bond hydrolysis, amino acid racemisation and decomposition. The patterns of diagenesis are complex; therefore the kinetic parameters of the main reactions were estimated by two different methods: 1) a well-established approach based on fitting mathematical expressions to the experimental data, e.g. first-order rate equations for hydrolysis and power-transformed first-order rate equations for racemisation; and 2) an alternative model-free approach, which was developed by estimating a “scaling” factor for the independent variable (time) which produces the best alignment of the experimental data. This method allows the calculation of the relative reaction rates for the different temperatures of isothermal heating. High-temperature data were compared with the extent of degradation detected in sub-fossil Patella specimens of known age, and we evaluated the ability of kinetic experiments to mimic diagenesis at burial temperature. The results highlighted a difference between patterns of degradation at low and high temperature and therefore we recommend caution for the extrapolation of protein breakdown rates to low burial temperatures for geochronological purposes when relying solely on kinetic data. ► High temperatures induce breakdown of closed-system proteins in Patella vulgata. ► Extent of racemisation, hydrolysis, decomposition quantified for multiple amino acids. ► Absence of leaching does not reduce the complexity of the diagenetic patterns. ► Kinetic parameters calculated by fits to 1st order models and a model-free approach. ► Relative rates of hydrolysis and racemisation are different at high/low temperature.