Molecular differential diagnosis of follicular thyroid carcinoma and adenoma based on gene expression profiling by using formalin-fixed paraffin-embedded tissues

• Published in: BMC medical genomics 2013-10, Vol.6 (1), p.38-38, Article 38
• Main Authors: Pfeifer, Aleksandra, Wojtas, Bartosz, Oczko-Wojciechowska, Malgorzata, Kukulska, Aleksandra, Czarniecka, Agnieszka, Eszlinger, Markus, Musholt, Thomas, Stokowy, Tomasz, Swierniak, Michal, Stobiecka, Ewa, Rusinek, Dagmara, Tyszkiewicz, Tomasz, Kowal, Monika, Jarzab, Michal, Hauptmann, Steffen, Lange, Dariusz, Paschke, Ralf, Jarzab, Barbara
• Format: Article
• Language: English
• Subjects: Adenocarcinoma, Follicular - diagnosis; Adenocarcinoma, Follicular - genetics; Adenocarcinoma, Follicular - pathology; Adenocarcinoma, Follicular - surgery; Adenoma; Aged; Diagnosis; Diagnosis, Differential; Formaldehyde; Gene expression; Gene Expression Profiling; Genes; Genetic aspects; Humans; Middle Aged; Molecular diagnostic techniques; Molecular Diagnostic Techniques - methods; Oligonucleotide Array Sequence Analysis; Paraffin Embedding; Postoperative Period; Thyroid cancer; Thyroid Neoplasms - diagnosis; Thyroid Neoplasms - genetics; Thyroid Neoplasms - pathology; Thyroid Neoplasms - surgery; Tissue Fixation
• ISSN: 1755-8794; 1755-8794
• DOI: 10.1186/1755-8794-6-38

Differential diagnosis between malignant follicular thyroid cancer (FTC) and benign follicular thyroid adenoma (FTA) is a great challenge for even an experienced pathologist and requires special effort. Molecular markers may potentially support a differential diagnosis between FTC and FTA in postoperative specimens. The purpose of this study was to derive molecular support for differential post-operative diagnosis, in the form of a simple multigene mRNA-based classifier that would differentiate between FTC and FTA tissue samples. A molecular classifier was created based on a combined analysis of two microarray datasets (using 66 thyroid samples). The performance of the classifier was assessed using an independent dataset comprising 71 formalin-fixed paraffin-embedded (FFPE) samples (31 FTC and 40 FTA), which were analysed by quantitative real-time PCR (qPCR). In addition, three other microarray datasets (62 samples) were used to confirm the utility of the classifier. Five of 8 genes selected from training datasets (ELMO1, EMCN, ITIH5, KCNAB1, SLCO2A1) were amplified by qPCR in FFPE material from an independent sample set. Three other genes did not amplify in FFPE material, probably due to low abundance. All 5 analysed genes were downregulated in FTC compared to FTA. The sensitivity and specificity of the 5-gene classifier tested on the FFPE dataset were 71% and 72%, respectively. The proposed approach could support histopathological examination: 5-gene classifier may aid in molecular discrimination between FTC and FTA in FFPE material.