SubtiWiki-a database for the model organism Bacillus subtilis that links pathway, interaction and expression information

Genome annotation and access to information from large-scale experimental approaches at the genome level are essential to improve our understanding of living cells and organisms. This is even more the case for model organisms that are the basis to study pathogens and technologically important specie...

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Bibliographic Details
Published in:Nucleic acids research 2014-01, Vol.42 (Database issue), p.D692-D698
Main Authors: Michna, Raphael H, Commichau, Fabian M, Tödter, Dominik, Zschiedrich, Christopher P, Stülke, Jörg
Format: Article
Language:English
Subjects:
Bacillus subtilis - genetics
Bacillus subtilis - metabolism
Bacillus subtilis - physiology
Bacterial Proteins - metabolism
Databases, Genetic
Gene Expression
Gene Expression Profiling
Genes, Bacterial
Genes, Essential
Genome, Bacterial
Internet
IV. Viruses, bacteria, protozoa and fungi
Metabolic Networks and Pathways
Models, Biological
Protein Interaction Maps
RNA, Bacterial - metabolism
Spores, Bacterial - genetics
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Description
Summary:Genome annotation and access to information from large-scale experimental approaches at the genome level are essential to improve our understanding of living cells and organisms. This is even more the case for model organisms that are the basis to study pathogens and technologically important species. We have generated SubtiWiki, a database for the Gram-positive model bacterium Bacillus subtilis (http://subtiwiki.uni-goettingen.de/). In addition to the established companion modules of SubtiWiki, SubtiPathways and SubtInteract, we have now created SubtiExpress, a third module, to visualize genome scale transcription data that are of unprecedented quality and density. Today, SubtiWiki is one of the most complete collections of knowledge on a living organism in one single resource.
ISSN:0305-1048
1362-4962
DOI:10.1093/nar/gkt1002