Whole-Genome Sequence of Serratia liquefaciens HUMV-21, a Cytotoxic, Quorum-Sensing, and Biofilm-Producing Clinical Isolate

A clinical isolate of Serratia liquefaciens (strain HUMV-21) was obtained from a skin ulcer of an adult patient. We report here its complete genome assembly using PacBio single-molecule real-time (SMRT) sequencing, which resulted in a single circular chromosome with 5.3 Mb. About 5,844 protein-codin...

Full description

Saved in:
Bibliographic Details
Published in:Genome announcements (Washington, DC) DC), 2015-05, Vol.3 (3)
Main Authors: Lázaro-Díez, María, Acosta, Felix, Remuzgo-Martínez, Sara, Ocampo-Sosa, Alain, Ocejo-Vinyals, Javier Gonzalo, Bravo, Jimena, El Aamri, Fátima, Escuela, Oliver, Martínez-Martínez, Luis, Ramos-Vivas, José
Format: Article
Language:English
Subjects:
Prokaryotes
Citations: Items that this one cites
Items that cite this one
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
cited_by cdi_FETCH-LOGICAL-c326t-d371a16991d0c82e4aeab19e1c14a01af0f1a8b3858c6bb1b7adcbbaa7cd92663
cites cdi_FETCH-LOGICAL-c326t-d371a16991d0c82e4aeab19e1c14a01af0f1a8b3858c6bb1b7adcbbaa7cd92663
container_end_page
container_issue 3
container_start_page
container_title Genome announcements (Washington, DC)
container_volume 3
creator Lázaro-Díez, María
Acosta, Felix
Remuzgo-Martínez, Sara
Ocampo-Sosa, Alain
Ocejo-Vinyals, Javier Gonzalo
Bravo, Jimena
El Aamri, Fátima
Escuela, Oliver
Martínez-Martínez, Luis
Ramos-Vivas, José
description A clinical isolate of Serratia liquefaciens (strain HUMV-21) was obtained from a skin ulcer of an adult patient. We report here its complete genome assembly using PacBio single-molecule real-time (SMRT) sequencing, which resulted in a single circular chromosome with 5.3 Mb. About 5,844 protein-coding genes are predicted from this assembly.
doi_str_mv 10.1128/genomeA.00533-15
format article
fullrecord <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_4447907</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>1684429172</sourcerecordid><originalsourceid>FETCH-LOGICAL-c326t-d371a16991d0c82e4aeab19e1c14a01af0f1a8b3858c6bb1b7adcbbaa7cd92663</originalsourceid><addsrcrecordid>eNpVUUFPFjEQbYxGCHL3ZHr0QLHT3W-3ezHBLwokGDWIHpvZ7uxHTbeFdtdI-PNU-CQ4l5m8efNmMo-x1yAPAZR-t6EQJzo6lHJVVQJWz9iugqYTWun2-ZN6h-3n_EuW0AWq9Uu2oxqpoFNql93-vIyexPG9Fj-n64WCJR7HUqeEs0PuXQFHtI5C5icXn38IBQcc-fpmjnP84-wB_7bEtEzivDBc2JRmGPgHF0fnJ_E1xWGxBeZr74Kz6Plpjh5nesVejOgz7W_zHrv49PH7-kScfTk-XR-dCVupZhZD1QKWyzsYpNWKaiTsoSOwUKMEHOUIqPtKr7Rt-h76Fgfb94itHTrVNNUee_-ge7X0Ew2WwpzQm6vkJkw3JqIz_3eCuzSb-NvUdd12si0Cb7cCKZZf5NlMLlvyHgPFJRtodF2rDlpVqPKBalPMOdH4uAak-Wub2dpm7m0zsCojb56e9zjwz6TqDjM_lwE</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1684429172</pqid></control><display><type>article</type><title>Whole-Genome Sequence of Serratia liquefaciens HUMV-21, a Cytotoxic, Quorum-Sensing, and Biofilm-Producing Clinical Isolate</title><source>American Society for Microbiology Journals</source><source>PubMed Central</source><creator>Lázaro-Díez, María ; Acosta, Felix ; Remuzgo-Martínez, Sara ; Ocampo-Sosa, Alain ; Ocejo-Vinyals, Javier Gonzalo ; Bravo, Jimena ; El Aamri, Fátima ; Escuela, Oliver ; Martínez-Martínez, Luis ; Ramos-Vivas, José</creator><creatorcontrib>Lázaro-Díez, María ; Acosta, Felix ; Remuzgo-Martínez, Sara ; Ocampo-Sosa, Alain ; Ocejo-Vinyals, Javier Gonzalo ; Bravo, Jimena ; El Aamri, Fátima ; Escuela, Oliver ; Martínez-Martínez, Luis ; Ramos-Vivas, José</creatorcontrib><description>A clinical isolate of Serratia liquefaciens (strain HUMV-21) was obtained from a skin ulcer of an adult patient. We report here its complete genome assembly using PacBio single-molecule real-time (SMRT) sequencing, which resulted in a single circular chromosome with 5.3 Mb. About 5,844 protein-coding genes are predicted from this assembly.</description><identifier>ISSN: 2169-8287</identifier><identifier>EISSN: 2169-8287</identifier><identifier>DOI: 10.1128/genomeA.00533-15</identifier><identifier>PMID: 26021922</identifier><language>eng</language><publisher>United States: American Society for Microbiology</publisher><subject>Prokaryotes</subject><ispartof>Genome announcements (Washington, DC), 2015-05, Vol.3 (3)</ispartof><rights>Copyright © 2015 Lázaro-Díez et al.</rights><rights>Copyright © 2015 Lázaro-Díez et al. 2015 Lázaro-Díez et al.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c326t-d371a16991d0c82e4aeab19e1c14a01af0f1a8b3858c6bb1b7adcbbaa7cd92663</citedby><cites>FETCH-LOGICAL-c326t-d371a16991d0c82e4aeab19e1c14a01af0f1a8b3858c6bb1b7adcbbaa7cd92663</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4447907/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4447907/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,3188,27924,27925,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/26021922$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Lázaro-Díez, María</creatorcontrib><creatorcontrib>Acosta, Felix</creatorcontrib><creatorcontrib>Remuzgo-Martínez, Sara</creatorcontrib><creatorcontrib>Ocampo-Sosa, Alain</creatorcontrib><creatorcontrib>Ocejo-Vinyals, Javier Gonzalo</creatorcontrib><creatorcontrib>Bravo, Jimena</creatorcontrib><creatorcontrib>El Aamri, Fátima</creatorcontrib><creatorcontrib>Escuela, Oliver</creatorcontrib><creatorcontrib>Martínez-Martínez, Luis</creatorcontrib><creatorcontrib>Ramos-Vivas, José</creatorcontrib><title>Whole-Genome Sequence of Serratia liquefaciens HUMV-21, a Cytotoxic, Quorum-Sensing, and Biofilm-Producing Clinical Isolate</title><title>Genome announcements (Washington, DC)</title><addtitle>Genome Announc</addtitle><description>A clinical isolate of Serratia liquefaciens (strain HUMV-21) was obtained from a skin ulcer of an adult patient. We report here its complete genome assembly using PacBio single-molecule real-time (SMRT) sequencing, which resulted in a single circular chromosome with 5.3 Mb. About 5,844 protein-coding genes are predicted from this assembly.</description><subject>Prokaryotes</subject><issn>2169-8287</issn><issn>2169-8287</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><recordid>eNpVUUFPFjEQbYxGCHL3ZHr0QLHT3W-3ezHBLwokGDWIHpvZ7uxHTbeFdtdI-PNU-CQ4l5m8efNmMo-x1yAPAZR-t6EQJzo6lHJVVQJWz9iugqYTWun2-ZN6h-3n_EuW0AWq9Uu2oxqpoFNql93-vIyexPG9Fj-n64WCJR7HUqeEs0PuXQFHtI5C5icXn38IBQcc-fpmjnP84-wB_7bEtEzivDBc2JRmGPgHF0fnJ_E1xWGxBeZr74Kz6Plpjh5nesVejOgz7W_zHrv49PH7-kScfTk-XR-dCVupZhZD1QKWyzsYpNWKaiTsoSOwUKMEHOUIqPtKr7Rt-h76Fgfb94itHTrVNNUee_-ge7X0Ew2WwpzQm6vkJkw3JqIz_3eCuzSb-NvUdd12si0Cb7cCKZZf5NlMLlvyHgPFJRtodF2rDlpVqPKBalPMOdH4uAak-Wub2dpm7m0zsCojb56e9zjwz6TqDjM_lwE</recordid><startdate>20150528</startdate><enddate>20150528</enddate><creator>Lázaro-Díez, María</creator><creator>Acosta, Felix</creator><creator>Remuzgo-Martínez, Sara</creator><creator>Ocampo-Sosa, Alain</creator><creator>Ocejo-Vinyals, Javier Gonzalo</creator><creator>Bravo, Jimena</creator><creator>El Aamri, Fátima</creator><creator>Escuela, Oliver</creator><creator>Martínez-Martínez, Luis</creator><creator>Ramos-Vivas, José</creator><general>American Society for Microbiology</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20150528</creationdate><title>Whole-Genome Sequence of Serratia liquefaciens HUMV-21, a Cytotoxic, Quorum-Sensing, and Biofilm-Producing Clinical Isolate</title><author>Lázaro-Díez, María ; Acosta, Felix ; Remuzgo-Martínez, Sara ; Ocampo-Sosa, Alain ; Ocejo-Vinyals, Javier Gonzalo ; Bravo, Jimena ; El Aamri, Fátima ; Escuela, Oliver ; Martínez-Martínez, Luis ; Ramos-Vivas, José</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c326t-d371a16991d0c82e4aeab19e1c14a01af0f1a8b3858c6bb1b7adcbbaa7cd92663</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Prokaryotes</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Lázaro-Díez, María</creatorcontrib><creatorcontrib>Acosta, Felix</creatorcontrib><creatorcontrib>Remuzgo-Martínez, Sara</creatorcontrib><creatorcontrib>Ocampo-Sosa, Alain</creatorcontrib><creatorcontrib>Ocejo-Vinyals, Javier Gonzalo</creatorcontrib><creatorcontrib>Bravo, Jimena</creatorcontrib><creatorcontrib>El Aamri, Fátima</creatorcontrib><creatorcontrib>Escuela, Oliver</creatorcontrib><creatorcontrib>Martínez-Martínez, Luis</creatorcontrib><creatorcontrib>Ramos-Vivas, José</creatorcontrib><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Genome announcements (Washington, DC)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Lázaro-Díez, María</au><au>Acosta, Felix</au><au>Remuzgo-Martínez, Sara</au><au>Ocampo-Sosa, Alain</au><au>Ocejo-Vinyals, Javier Gonzalo</au><au>Bravo, Jimena</au><au>El Aamri, Fátima</au><au>Escuela, Oliver</au><au>Martínez-Martínez, Luis</au><au>Ramos-Vivas, José</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Whole-Genome Sequence of Serratia liquefaciens HUMV-21, a Cytotoxic, Quorum-Sensing, and Biofilm-Producing Clinical Isolate</atitle><jtitle>Genome announcements (Washington, DC)</jtitle><addtitle>Genome Announc</addtitle><date>2015-05-28</date><risdate>2015</risdate><volume>3</volume><issue>3</issue><issn>2169-8287</issn><eissn>2169-8287</eissn><abstract>A clinical isolate of Serratia liquefaciens (strain HUMV-21) was obtained from a skin ulcer of an adult patient. We report here its complete genome assembly using PacBio single-molecule real-time (SMRT) sequencing, which resulted in a single circular chromosome with 5.3 Mb. About 5,844 protein-coding genes are predicted from this assembly.</abstract><cop>United States</cop><pub>American Society for Microbiology</pub><pmid>26021922</pmid><doi>10.1128/genomeA.00533-15</doi><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 2169-8287
ispartof Genome announcements (Washington, DC), 2015-05, Vol.3 (3)
issn 2169-8287
2169-8287
language eng
recordid cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_4447907
source American Society for Microbiology Journals; PubMed Central
subjects Prokaryotes
title Whole-Genome Sequence of Serratia liquefaciens HUMV-21, a Cytotoxic, Quorum-Sensing, and Biofilm-Producing Clinical Isolate
url http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-01T12%3A09%3A14IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Whole-Genome%20Sequence%20of%20Serratia%20liquefaciens%20HUMV-21,%20a%20Cytotoxic,%20Quorum-Sensing,%20and%20Biofilm-Producing%20Clinical%20Isolate&rft.jtitle=Genome%20announcements%20(Washington,%20DC)&rft.au=L%C3%A1zaro-D%C3%ADez,%20Mar%C3%ADa&rft.date=2015-05-28&rft.volume=3&rft.issue=3&rft.issn=2169-8287&rft.eissn=2169-8287&rft_id=info:doi/10.1128/genomeA.00533-15&rft_dat=%3Cproquest_pubme%3E1684429172%3C/proquest_pubme%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c326t-d371a16991d0c82e4aeab19e1c14a01af0f1a8b3858c6bb1b7adcbbaa7cd92663%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_pqid=1684429172&rft_id=info:pmid/26021922&rfr_iscdi=true