Loading…
A new vaccine escape mutant of hepatitis B virus causes occult infection
There is growing public concern regarding assay sensitivity to HBsAg mutants in clinical diagnosis and vaccine escape. The aim of this study is to introduce a new HBsAg mutant strain. The serum samples were those of patient X at the age of 3 months and 3 years respectively, and of her mother immedia...
Saved in:
Published in: | Human vaccines & immunotherapeutics 2015, Vol.11 (2), p.407-410 |
---|---|
Main Authors: | , , |
Format: | Article |
Language: | English |
Subjects: | |
Citations: | Items that this one cites Items that cite this one |
Online Access: | Get full text |
Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
cited_by | cdi_FETCH-LOGICAL-c408t-9481599516fe10a9910768833ee6a7c121a20653fd5898f928a80b4310ee4ae3 |
---|---|
cites | cdi_FETCH-LOGICAL-c408t-9481599516fe10a9910768833ee6a7c121a20653fd5898f928a80b4310ee4ae3 |
container_end_page | 410 |
container_issue | 2 |
container_start_page | 407 |
container_title | Human vaccines & immunotherapeutics |
container_volume | 11 |
creator | Ye, Qing Shang, Shi-Qiang Li, Wei |
description | There is growing public concern regarding assay sensitivity to HBsAg mutants in clinical diagnosis and vaccine escape. The aim of this study is to introduce a new HBsAg mutant strain. The serum samples were those of patient X at the age of 3 months and 3 years respectively, and of her mother immediately before parturition, which were used to amplify the HBsAg-coding DNA fragments by PCR. The HBsAg DNA sequences were translated into their corresponding amino acid sequences and then aligned in pubmed with nucleotide blast. The sequencing data of S coding regions shows that patient X has been infected by a new HBV variant with an A to C substitution at nt431, resulting in an Asp(GAC)to Ala(GCC) substitution at aa144 of major protein; CC to AA substitution at nt359 and nt360, resulting in an Pro(CCC) to Gln(CAA) substitution at aa120 of pre "a" epitope; A to G substitution at nt491, resulting in an Glu(GAG) to Gly(GGG) substitution at aa164 of post "a" epitope. Three new mutations (S171F, S174N and Q181R) at the antigenic epitopes of HBV presented by HLA class I molecules are found. The HBV mutant strain causes vaccine escape and occult infection. |
doi_str_mv | 10.4161/21645515.2014.994461 |
format | article |
fullrecord | <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_4514362</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>1669452688</sourcerecordid><originalsourceid>FETCH-LOGICAL-c408t-9481599516fe10a9910768833ee6a7c121a20653fd5898f928a80b4310ee4ae3</originalsourceid><addsrcrecordid>eNpVUU1LAzEQDaLYUvsPRHL0sjWTTdLNRaiiVih46cFbSNNZG9kvN9mK_94u_UDnMsPMvDePeYRcA5sIUHDHQQkpQU44AzHRWggFZ2TYtxMpxfv5qQY5IOMQPtkupowLpS7JgEulueJ8SOYzWuE33VrnfIUUg7MN0rKLtoq0zukGGxt99IE-0K1vu0Cd7QIGWjvXFZH6KkcXfV1dkYvcFgHHhzwiy-en5eM8Wby9vD7OFokTLIuJFhlIrSWoHIFZrYFNVZalKaKyUwccLGdKpvlaZjrLNc9sxlYiBYYoLKYjcr-nbbpViWuHVWxtYZrWl7b9MbX15v-k8hvzUW-NkCBSxXcEtweCtv7qMERT-uCwKGyFdRcMKKWF5L2mERH7VdfWIbSYn84AM70N5miD6W0wext2sJu_Ek-g49PTX4-bgjU</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1669452688</pqid></control><display><type>article</type><title>A new vaccine escape mutant of hepatitis B virus causes occult infection</title><source>PubMed Central</source><creator>Ye, Qing ; Shang, Shi-Qiang ; Li, Wei</creator><creatorcontrib>Ye, Qing ; Shang, Shi-Qiang ; Li, Wei</creatorcontrib><description>There is growing public concern regarding assay sensitivity to HBsAg mutants in clinical diagnosis and vaccine escape. The aim of this study is to introduce a new HBsAg mutant strain. The serum samples were those of patient X at the age of 3 months and 3 years respectively, and of her mother immediately before parturition, which were used to amplify the HBsAg-coding DNA fragments by PCR. The HBsAg DNA sequences were translated into their corresponding amino acid sequences and then aligned in pubmed with nucleotide blast. The sequencing data of S coding regions shows that patient X has been infected by a new HBV variant with an A to C substitution at nt431, resulting in an Asp(GAC)to Ala(GCC) substitution at aa144 of major protein; CC to AA substitution at nt359 and nt360, resulting in an Pro(CCC) to Gln(CAA) substitution at aa120 of pre "a" epitope; A to G substitution at nt491, resulting in an Glu(GAG) to Gly(GGG) substitution at aa164 of post "a" epitope. Three new mutations (S171F, S174N and Q181R) at the antigenic epitopes of HBV presented by HLA class I molecules are found. The HBV mutant strain causes vaccine escape and occult infection.</description><identifier>ISSN: 2164-5515</identifier><identifier>EISSN: 2164-554X</identifier><identifier>DOI: 10.4161/21645515.2014.994461</identifier><identifier>PMID: 25692622</identifier><language>eng</language><publisher>United States: Taylor & Francis</publisher><subject>Amino Acid Substitution ; Animals ; Child, Preschool ; Computational Biology ; DNA, Viral - genetics ; Female ; Hepatitis B - immunology ; Hepatitis B - pathology ; Hepatitis B - virology ; Hepatitis B Surface Antigens - genetics ; Hepatitis B Surface Antigens - immunology ; Hepatitis B Vaccines - immunology ; Hepatitis B virus - genetics ; Hepatitis B virus - immunology ; HEPATITIS/Case Report ; Humans ; Immune Evasion ; Infant ; Infant, Newborn ; Sequence Analysis, DNA ; Sequence Homology, Amino Acid</subject><ispartof>Human vaccines & immunotherapeutics, 2015, Vol.11 (2), p.407-410</ispartof><rights>2015 Taylor & Francis Group, LLC 2015 Taylor & Francis Group, LLC</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c408t-9481599516fe10a9910768833ee6a7c121a20653fd5898f928a80b4310ee4ae3</citedby><cites>FETCH-LOGICAL-c408t-9481599516fe10a9910768833ee6a7c121a20653fd5898f928a80b4310ee4ae3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4514362/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC4514362/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,727,780,784,885,4024,27923,27924,27925,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/25692622$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Ye, Qing</creatorcontrib><creatorcontrib>Shang, Shi-Qiang</creatorcontrib><creatorcontrib>Li, Wei</creatorcontrib><title>A new vaccine escape mutant of hepatitis B virus causes occult infection</title><title>Human vaccines & immunotherapeutics</title><addtitle>Hum Vaccin Immunother</addtitle><description>There is growing public concern regarding assay sensitivity to HBsAg mutants in clinical diagnosis and vaccine escape. The aim of this study is to introduce a new HBsAg mutant strain. The serum samples were those of patient X at the age of 3 months and 3 years respectively, and of her mother immediately before parturition, which were used to amplify the HBsAg-coding DNA fragments by PCR. The HBsAg DNA sequences were translated into their corresponding amino acid sequences and then aligned in pubmed with nucleotide blast. The sequencing data of S coding regions shows that patient X has been infected by a new HBV variant with an A to C substitution at nt431, resulting in an Asp(GAC)to Ala(GCC) substitution at aa144 of major protein; CC to AA substitution at nt359 and nt360, resulting in an Pro(CCC) to Gln(CAA) substitution at aa120 of pre "a" epitope; A to G substitution at nt491, resulting in an Glu(GAG) to Gly(GGG) substitution at aa164 of post "a" epitope. Three new mutations (S171F, S174N and Q181R) at the antigenic epitopes of HBV presented by HLA class I molecules are found. The HBV mutant strain causes vaccine escape and occult infection.</description><subject>Amino Acid Substitution</subject><subject>Animals</subject><subject>Child, Preschool</subject><subject>Computational Biology</subject><subject>DNA, Viral - genetics</subject><subject>Female</subject><subject>Hepatitis B - immunology</subject><subject>Hepatitis B - pathology</subject><subject>Hepatitis B - virology</subject><subject>Hepatitis B Surface Antigens - genetics</subject><subject>Hepatitis B Surface Antigens - immunology</subject><subject>Hepatitis B Vaccines - immunology</subject><subject>Hepatitis B virus - genetics</subject><subject>Hepatitis B virus - immunology</subject><subject>HEPATITIS/Case Report</subject><subject>Humans</subject><subject>Immune Evasion</subject><subject>Infant</subject><subject>Infant, Newborn</subject><subject>Sequence Analysis, DNA</subject><subject>Sequence Homology, Amino Acid</subject><issn>2164-5515</issn><issn>2164-554X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><recordid>eNpVUU1LAzEQDaLYUvsPRHL0sjWTTdLNRaiiVih46cFbSNNZG9kvN9mK_94u_UDnMsPMvDePeYRcA5sIUHDHQQkpQU44AzHRWggFZ2TYtxMpxfv5qQY5IOMQPtkupowLpS7JgEulueJ8SOYzWuE33VrnfIUUg7MN0rKLtoq0zukGGxt99IE-0K1vu0Cd7QIGWjvXFZH6KkcXfV1dkYvcFgHHhzwiy-en5eM8Wby9vD7OFokTLIuJFhlIrSWoHIFZrYFNVZalKaKyUwccLGdKpvlaZjrLNc9sxlYiBYYoLKYjcr-nbbpViWuHVWxtYZrWl7b9MbX15v-k8hvzUW-NkCBSxXcEtweCtv7qMERT-uCwKGyFdRcMKKWF5L2mERH7VdfWIbSYn84AM70N5miD6W0wext2sJu_Ek-g49PTX4-bgjU</recordid><startdate>2015</startdate><enddate>2015</enddate><creator>Ye, Qing</creator><creator>Shang, Shi-Qiang</creator><creator>Li, Wei</creator><general>Taylor & Francis</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>2015</creationdate><title>A new vaccine escape mutant of hepatitis B virus causes occult infection</title><author>Ye, Qing ; Shang, Shi-Qiang ; Li, Wei</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c408t-9481599516fe10a9910768833ee6a7c121a20653fd5898f928a80b4310ee4ae3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Amino Acid Substitution</topic><topic>Animals</topic><topic>Child, Preschool</topic><topic>Computational Biology</topic><topic>DNA, Viral - genetics</topic><topic>Female</topic><topic>Hepatitis B - immunology</topic><topic>Hepatitis B - pathology</topic><topic>Hepatitis B - virology</topic><topic>Hepatitis B Surface Antigens - genetics</topic><topic>Hepatitis B Surface Antigens - immunology</topic><topic>Hepatitis B Vaccines - immunology</topic><topic>Hepatitis B virus - genetics</topic><topic>Hepatitis B virus - immunology</topic><topic>HEPATITIS/Case Report</topic><topic>Humans</topic><topic>Immune Evasion</topic><topic>Infant</topic><topic>Infant, Newborn</topic><topic>Sequence Analysis, DNA</topic><topic>Sequence Homology, Amino Acid</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Ye, Qing</creatorcontrib><creatorcontrib>Shang, Shi-Qiang</creatorcontrib><creatorcontrib>Li, Wei</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Human vaccines & immunotherapeutics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Ye, Qing</au><au>Shang, Shi-Qiang</au><au>Li, Wei</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>A new vaccine escape mutant of hepatitis B virus causes occult infection</atitle><jtitle>Human vaccines & immunotherapeutics</jtitle><addtitle>Hum Vaccin Immunother</addtitle><date>2015</date><risdate>2015</risdate><volume>11</volume><issue>2</issue><spage>407</spage><epage>410</epage><pages>407-410</pages><issn>2164-5515</issn><eissn>2164-554X</eissn><abstract>There is growing public concern regarding assay sensitivity to HBsAg mutants in clinical diagnosis and vaccine escape. The aim of this study is to introduce a new HBsAg mutant strain. The serum samples were those of patient X at the age of 3 months and 3 years respectively, and of her mother immediately before parturition, which were used to amplify the HBsAg-coding DNA fragments by PCR. The HBsAg DNA sequences were translated into their corresponding amino acid sequences and then aligned in pubmed with nucleotide blast. The sequencing data of S coding regions shows that patient X has been infected by a new HBV variant with an A to C substitution at nt431, resulting in an Asp(GAC)to Ala(GCC) substitution at aa144 of major protein; CC to AA substitution at nt359 and nt360, resulting in an Pro(CCC) to Gln(CAA) substitution at aa120 of pre "a" epitope; A to G substitution at nt491, resulting in an Glu(GAG) to Gly(GGG) substitution at aa164 of post "a" epitope. Three new mutations (S171F, S174N and Q181R) at the antigenic epitopes of HBV presented by HLA class I molecules are found. The HBV mutant strain causes vaccine escape and occult infection.</abstract><cop>United States</cop><pub>Taylor & Francis</pub><pmid>25692622</pmid><doi>10.4161/21645515.2014.994461</doi><tpages>4</tpages><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
identifier | ISSN: 2164-5515 |
ispartof | Human vaccines & immunotherapeutics, 2015, Vol.11 (2), p.407-410 |
issn | 2164-5515 2164-554X |
language | eng |
recordid | cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_4514362 |
source | PubMed Central |
subjects | Amino Acid Substitution Animals Child, Preschool Computational Biology DNA, Viral - genetics Female Hepatitis B - immunology Hepatitis B - pathology Hepatitis B - virology Hepatitis B Surface Antigens - genetics Hepatitis B Surface Antigens - immunology Hepatitis B Vaccines - immunology Hepatitis B virus - genetics Hepatitis B virus - immunology HEPATITIS/Case Report Humans Immune Evasion Infant Infant, Newborn Sequence Analysis, DNA Sequence Homology, Amino Acid |
title | A new vaccine escape mutant of hepatitis B virus causes occult infection |
url | http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-04T17%3A26%3A31IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=A%20new%20vaccine%20escape%20mutant%20of%20hepatitis%20B%20virus%20causes%20occult%20infection&rft.jtitle=Human%20vaccines%20&%20immunotherapeutics&rft.au=Ye,%20Qing&rft.date=2015&rft.volume=11&rft.issue=2&rft.spage=407&rft.epage=410&rft.pages=407-410&rft.issn=2164-5515&rft.eissn=2164-554X&rft_id=info:doi/10.4161/21645515.2014.994461&rft_dat=%3Cproquest_pubme%3E1669452688%3C/proquest_pubme%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c408t-9481599516fe10a9910768833ee6a7c121a20653fd5898f928a80b4310ee4ae3%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_pqid=1669452688&rft_id=info:pmid/25692622&rfr_iscdi=true |