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Nomenclature updates resulting from the evolution of avian influenza A(H5) virus clades 2.1.3.2a, 2.2.1, and 2.3.4 during 2013–2014
Aim The A/goose/Guangdong/1/96‐like hemagglutinin (HA) genes of highly pathogenic avian influenza (HPAI) A(H5) viruses have continued to rapidly evolve since the most recent update to the H5 clade nomenclature by the WHO/OIE/FAO H5N1 Evolution Working Group. New clades diverging beyond established b...
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| Published in: | Influenza and other respiratory viruses 2015-09, Vol.9 (5), p.271-276 |
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| Main Authors: | , |
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| container_end_page | 276 |
| container_issue | 5 |
| container_start_page | 271 |
| container_title | Influenza and other respiratory viruses |
| container_volume | 9 |
| creator | Smith, Gavin J. D. Donis, Ruben O. |
| description | Aim
The A/goose/Guangdong/1/96‐like hemagglutinin (HA) genes of highly pathogenic avian influenza (HPAI) A(H5) viruses have continued to rapidly evolve since the most recent update to the H5 clade nomenclature by the WHO/OIE/FAO H5N1 Evolution Working Group. New clades diverging beyond established boundaries need to be identified and designated accordingly.
Method
Hemagglutinin sequences deposited in publicly accessible databases up to December 31, 2014, were analyzed by phylogenetic and average pairwise distance methods to identify new clades that merit nomenclature changes.
Results
Three new clade designations were recommended based on division of clade 2·1·3·2a (Indonesia), 2·2·1 (Egypt), and 2·3·4 (widespread detection in Asia, Europe, and North America) that includes newly emergent HPAI virus subtypes H5N2, H5N3, H5N5, H5N6, and H5N8.
Conclusion
Continued global surveillance for HPAI A(H5) viruses in all host species and timely reporting of sequence data will be critical to quickly identify new clades and assess their potential impact on human and animal health. |
| doi_str_mv | 10.1111/irv.12324 |
| format | article |
| fullrecord | <record><control><sourceid>gale_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_4548997</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><galeid>A711860117</galeid><sourcerecordid>A711860117</sourcerecordid><originalsourceid>FETCH-LOGICAL-c5764-ae53d55877093d0919e167c4728114f7d2ff17cecd9ad3732a809b8deb86455c3</originalsourceid><addsrcrecordid>eNp1kt1qFDEUgAdRbK1e-AIS8KaF7jS_k-SmsBS1haIg6m3IJpltykyyJpOVeuWNT-Ab-iRm3bpa0eTiHJIv3yGH0zRPEWxRXSc-rVuECab3mn3EGZzhjsn7u5zCveZRztcQsk4w-rDZw0x2HUFov_n6Oo4umEFPJTlQVlZPLoPkchkmH5agT3EE05UDbh2HMvkYQOyBXnsdgA_9UFz4rMH88JwdgbVPJYPqslWBW9SSFuvjmtX8GOhga0paCmxJGzWGiHz_8q0G-rh50Oshuye38aB5__LFu7Pz2eWbVxdn88uZYbyjM-0YsYwJzqEkFkokHeq4oRwLhGjPLe57xI0zVmpLOMFaQLkQ1i1ERxkz5KA53XpXZTE6a1yYkh7UKvlRpxsVtVd3b4K_Usu4VpRRISWvgsNbQYofi8uTGn02bhh0cLFkhThEQiIIcUWf_4Vex5JC_Z7CWEjBu4r-ppZ6cKp2NNa6ZiNVc46QqBDalG3_QdVt3ehNDK739fzOg6PtA5Nizsn1uz8iqDYzo-rMqJ8zU9lnfzZlR_4akgqcbIFPtcrN_03q4u2HrfIHNcrGjg</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2289876018</pqid></control><display><type>article</type><title>Nomenclature updates resulting from the evolution of avian influenza A(H5) virus clades 2.1.3.2a, 2.2.1, and 2.3.4 during 2013–2014</title><source>Wiley-Blackwell Open Access Collection</source><source>Open Access: PubMed Central</source><source>Publicly Available Content (ProQuest)</source><creator>Smith, Gavin J. D. ; Donis, Ruben O.</creator><creatorcontrib>Smith, Gavin J. D. ; Donis, Ruben O. ; World Health Organization/World Organisation for Animal Health/Food and Agriculture Organization (WHO/OIE/FAO) H5 Evolution Working Group ; World Health Organization/World Organisation for Animal Health/Food and Agriculture Organization (WHO/OIE/FAO) H5 Evolution Working Group</creatorcontrib><description>Aim
The A/goose/Guangdong/1/96‐like hemagglutinin (HA) genes of highly pathogenic avian influenza (HPAI) A(H5) viruses have continued to rapidly evolve since the most recent update to the H5 clade nomenclature by the WHO/OIE/FAO H5N1 Evolution Working Group. New clades diverging beyond established boundaries need to be identified and designated accordingly.
Method
Hemagglutinin sequences deposited in publicly accessible databases up to December 31, 2014, were analyzed by phylogenetic and average pairwise distance methods to identify new clades that merit nomenclature changes.
Results
Three new clade designations were recommended based on division of clade 2·1·3·2a (Indonesia), 2·2·1 (Egypt), and 2·3·4 (widespread detection in Asia, Europe, and North America) that includes newly emergent HPAI virus subtypes H5N2, H5N3, H5N5, H5N6, and H5N8.
Conclusion
Continued global surveillance for HPAI A(H5) viruses in all host species and timely reporting of sequence data will be critical to quickly identify new clades and assess their potential impact on human and animal health.</description><identifier>ISSN: 1750-2640</identifier><identifier>EISSN: 1750-2659</identifier><identifier>DOI: 10.1111/irv.12324</identifier><identifier>PMID: 25966311</identifier><language>eng</language><publisher>England: John Wiley & Sons, Inc</publisher><subject>Analysis ; Animal health ; Animals ; Aquatic birds ; Avian flu ; Avian influenza ; Avian influenza viruses ; Biological Evolution ; Birds ; clade nomenclature ; Evolution ; Genes ; H5 subtype ; hemagglutinin ; Hemagglutinin Glycoproteins, Influenza Virus - genetics ; Hemagglutinins ; highly pathogenic avian influenza ; Humans ; Identification methods ; Influenza ; Influenza A ; Influenza A virus - classification ; Influenza A virus - genetics ; Influenza A virus - isolation & purification ; Influenza in Birds - virology ; Influenza, Human - virology ; Laboratories ; Lectins ; molecular epidemiology ; Molecular Sequence Data ; Nomenclature ; Phylogenetics ; Phylogeny ; Poultry ; Poultry Diseases - virology ; Respiratory diseases ; Short ; Surveillance ; viral evolution ; Viruses ; Working groups</subject><ispartof>Influenza and other respiratory viruses, 2015-09, Vol.9 (5), p.271-276</ispartof><rights>2015 The Authors. Published by John Wiley & Sons Ltd.</rights><rights>2015 The Authors. Influenza and Other Respiratory Viruses Published by John Wiley & Sons Ltd.</rights><rights>COPYRIGHT 2015 John Wiley & Sons, Inc.</rights><rights>2015. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2015 The Authors. Published by John Wiley & Sons Ltd. 2015</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c5764-ae53d55877093d0919e167c4728114f7d2ff17cecd9ad3732a809b8deb86455c3</citedby><cites>FETCH-LOGICAL-c5764-ae53d55877093d0919e167c4728114f7d2ff17cecd9ad3732a809b8deb86455c3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.proquest.com/docview/2289876018/fulltextPDF?pq-origsite=primo$$EPDF$$P50$$Gproquest$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/2289876018?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,11562,25753,27924,27925,37012,37013,44590,46052,46476,53791,53793,75126</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/25966311$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Smith, Gavin J. D.</creatorcontrib><creatorcontrib>Donis, Ruben O.</creatorcontrib><creatorcontrib>World Health Organization/World Organisation for Animal Health/Food and Agriculture Organization (WHO/OIE/FAO) H5 Evolution Working Group</creatorcontrib><creatorcontrib>World Health Organization/World Organisation for Animal Health/Food and Agriculture Organization (WHO/OIE/FAO) H5 Evolution Working Group</creatorcontrib><title>Nomenclature updates resulting from the evolution of avian influenza A(H5) virus clades 2.1.3.2a, 2.2.1, and 2.3.4 during 2013–2014</title><title>Influenza and other respiratory viruses</title><addtitle>Influenza Other Respir Viruses</addtitle><description>Aim
The A/goose/Guangdong/1/96‐like hemagglutinin (HA) genes of highly pathogenic avian influenza (HPAI) A(H5) viruses have continued to rapidly evolve since the most recent update to the H5 clade nomenclature by the WHO/OIE/FAO H5N1 Evolution Working Group. New clades diverging beyond established boundaries need to be identified and designated accordingly.
Method
Hemagglutinin sequences deposited in publicly accessible databases up to December 31, 2014, were analyzed by phylogenetic and average pairwise distance methods to identify new clades that merit nomenclature changes.
Results
Three new clade designations were recommended based on division of clade 2·1·3·2a (Indonesia), 2·2·1 (Egypt), and 2·3·4 (widespread detection in Asia, Europe, and North America) that includes newly emergent HPAI virus subtypes H5N2, H5N3, H5N5, H5N6, and H5N8.
Conclusion
Continued global surveillance for HPAI A(H5) viruses in all host species and timely reporting of sequence data will be critical to quickly identify new clades and assess their potential impact on human and animal health.</description><subject>Analysis</subject><subject>Animal health</subject><subject>Animals</subject><subject>Aquatic birds</subject><subject>Avian flu</subject><subject>Avian influenza</subject><subject>Avian influenza viruses</subject><subject>Biological Evolution</subject><subject>Birds</subject><subject>clade nomenclature</subject><subject>Evolution</subject><subject>Genes</subject><subject>H5 subtype</subject><subject>hemagglutinin</subject><subject>Hemagglutinin Glycoproteins, Influenza Virus - genetics</subject><subject>Hemagglutinins</subject><subject>highly pathogenic avian influenza</subject><subject>Humans</subject><subject>Identification methods</subject><subject>Influenza</subject><subject>Influenza A</subject><subject>Influenza A virus - classification</subject><subject>Influenza A virus - genetics</subject><subject>Influenza A virus - isolation & purification</subject><subject>Influenza in Birds - virology</subject><subject>Influenza, Human - virology</subject><subject>Laboratories</subject><subject>Lectins</subject><subject>molecular epidemiology</subject><subject>Molecular Sequence Data</subject><subject>Nomenclature</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Poultry</subject><subject>Poultry Diseases - virology</subject><subject>Respiratory diseases</subject><subject>Short</subject><subject>Surveillance</subject><subject>viral evolution</subject><subject>Viruses</subject><subject>Working groups</subject><issn>1750-2640</issn><issn>1750-2659</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>24P</sourceid><sourceid>PIMPY</sourceid><recordid>eNp1kt1qFDEUgAdRbK1e-AIS8KaF7jS_k-SmsBS1haIg6m3IJpltykyyJpOVeuWNT-Ab-iRm3bpa0eTiHJIv3yGH0zRPEWxRXSc-rVuECab3mn3EGZzhjsn7u5zCveZRztcQsk4w-rDZw0x2HUFov_n6Oo4umEFPJTlQVlZPLoPkchkmH5agT3EE05UDbh2HMvkYQOyBXnsdgA_9UFz4rMH88JwdgbVPJYPqslWBW9SSFuvjmtX8GOhga0paCmxJGzWGiHz_8q0G-rh50Oshuye38aB5__LFu7Pz2eWbVxdn88uZYbyjM-0YsYwJzqEkFkokHeq4oRwLhGjPLe57xI0zVmpLOMFaQLkQ1i1ERxkz5KA53XpXZTE6a1yYkh7UKvlRpxsVtVd3b4K_Usu4VpRRISWvgsNbQYofi8uTGn02bhh0cLFkhThEQiIIcUWf_4Vex5JC_Z7CWEjBu4r-ppZ6cKp2NNa6ZiNVc46QqBDalG3_QdVt3ehNDK739fzOg6PtA5Nizsn1uz8iqDYzo-rMqJ8zU9lnfzZlR_4akgqcbIFPtcrN_03q4u2HrfIHNcrGjg</recordid><startdate>201509</startdate><enddate>201509</enddate><creator>Smith, Gavin J. D.</creator><creator>Donis, Ruben O.</creator><general>John Wiley & Sons, Inc</general><general>John Wiley & Sons, Ltd</general><scope>24P</scope><scope>WIN</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7T2</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>H94</scope><scope>K9.</scope><scope>M0S</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>201509</creationdate><title>Nomenclature updates resulting from the evolution of avian influenza A(H5) virus clades 2.1.3.2a, 2.2.1, and 2.3.4 during 2013–2014</title><author>Smith, Gavin J. D. ; Donis, Ruben O.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c5764-ae53d55877093d0919e167c4728114f7d2ff17cecd9ad3732a809b8deb86455c3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Analysis</topic><topic>Animal health</topic><topic>Animals</topic><topic>Aquatic birds</topic><topic>Avian flu</topic><topic>Avian influenza</topic><topic>Avian influenza viruses</topic><topic>Biological Evolution</topic><topic>Birds</topic><topic>clade nomenclature</topic><topic>Evolution</topic><topic>Genes</topic><topic>H5 subtype</topic><topic>hemagglutinin</topic><topic>Hemagglutinin Glycoproteins, Influenza Virus - genetics</topic><topic>Hemagglutinins</topic><topic>highly pathogenic avian influenza</topic><topic>Humans</topic><topic>Identification methods</topic><topic>Influenza</topic><topic>Influenza A</topic><topic>Influenza A virus - classification</topic><topic>Influenza A virus - genetics</topic><topic>Influenza A virus - isolation & purification</topic><topic>Influenza in Birds - virology</topic><topic>Influenza, Human - virology</topic><topic>Laboratories</topic><topic>Lectins</topic><topic>molecular epidemiology</topic><topic>Molecular Sequence Data</topic><topic>Nomenclature</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Poultry</topic><topic>Poultry Diseases - virology</topic><topic>Respiratory diseases</topic><topic>Short</topic><topic>Surveillance</topic><topic>viral evolution</topic><topic>Viruses</topic><topic>Working groups</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Smith, Gavin J. D.</creatorcontrib><creatorcontrib>Donis, Ruben O.</creatorcontrib><creatorcontrib>World Health Organization/World Organisation for Animal Health/Food and Agriculture Organization (WHO/OIE/FAO) H5 Evolution Working Group</creatorcontrib><creatorcontrib>World Health Organization/World Organisation for Animal Health/Food and Agriculture Organization (WHO/OIE/FAO) H5 Evolution Working Group</creatorcontrib><collection>Wiley-Blackwell Open Access Collection</collection><collection>Wiley Free Archive</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Health and Safety Science Abstracts (Full archive)</collection><collection>Virology and AIDS Abstracts</collection><collection>ProQuest Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest Central</collection><collection>ProQuest Central Essentials</collection><collection>AUTh Library subscriptions: ProQuest Central</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Publicly Available Content (ProQuest)</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Influenza and other respiratory viruses</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Smith, Gavin J. D.</au><au>Donis, Ruben O.</au><aucorp>World Health Organization/World Organisation for Animal Health/Food and Agriculture Organization (WHO/OIE/FAO) H5 Evolution Working Group</aucorp><aucorp>World Health Organization/World Organisation for Animal Health/Food and Agriculture Organization (WHO/OIE/FAO) H5 Evolution Working Group</aucorp><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Nomenclature updates resulting from the evolution of avian influenza A(H5) virus clades 2.1.3.2a, 2.2.1, and 2.3.4 during 2013–2014</atitle><jtitle>Influenza and other respiratory viruses</jtitle><addtitle>Influenza Other Respir Viruses</addtitle><date>2015-09</date><risdate>2015</risdate><volume>9</volume><issue>5</issue><spage>271</spage><epage>276</epage><pages>271-276</pages><issn>1750-2640</issn><eissn>1750-2659</eissn><abstract>Aim
The A/goose/Guangdong/1/96‐like hemagglutinin (HA) genes of highly pathogenic avian influenza (HPAI) A(H5) viruses have continued to rapidly evolve since the most recent update to the H5 clade nomenclature by the WHO/OIE/FAO H5N1 Evolution Working Group. New clades diverging beyond established boundaries need to be identified and designated accordingly.
Method
Hemagglutinin sequences deposited in publicly accessible databases up to December 31, 2014, were analyzed by phylogenetic and average pairwise distance methods to identify new clades that merit nomenclature changes.
Results
Three new clade designations were recommended based on division of clade 2·1·3·2a (Indonesia), 2·2·1 (Egypt), and 2·3·4 (widespread detection in Asia, Europe, and North America) that includes newly emergent HPAI virus subtypes H5N2, H5N3, H5N5, H5N6, and H5N8.
Conclusion
Continued global surveillance for HPAI A(H5) viruses in all host species and timely reporting of sequence data will be critical to quickly identify new clades and assess their potential impact on human and animal health.</abstract><cop>England</cop><pub>John Wiley & Sons, Inc</pub><pmid>25966311</pmid><doi>10.1111/irv.12324</doi><tpages>6</tpages><oa>free_for_read</oa></addata></record> |
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| source | Wiley-Blackwell Open Access Collection; Open Access: PubMed Central; Publicly Available Content (ProQuest) |
| subjects | Analysis Animal health Animals Aquatic birds Avian flu Avian influenza Avian influenza viruses Biological Evolution Birds clade nomenclature Evolution Genes H5 subtype hemagglutinin Hemagglutinin Glycoproteins, Influenza Virus - genetics Hemagglutinins highly pathogenic avian influenza Humans Identification methods Influenza Influenza A Influenza A virus - classification Influenza A virus - genetics Influenza A virus - isolation & purification Influenza in Birds - virology Influenza, Human - virology Laboratories Lectins molecular epidemiology Molecular Sequence Data Nomenclature Phylogenetics Phylogeny Poultry Poultry Diseases - virology Respiratory diseases Short Surveillance viral evolution Viruses Working groups |
| title | Nomenclature updates resulting from the evolution of avian influenza A(H5) virus clades 2.1.3.2a, 2.2.1, and 2.3.4 during 2013–2014 |
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