Nuclear Extracts of Chicken Embryos Promote an Active Demethylation of DNA by Excision Repair of 5-Methyldeoxycytidine

• Published in: Proceedings of the National Academy of Sciences - PNAS 1993-05, Vol.90 (10), p.4684-4688
• Main Author: Jost, Jean-Pierre
• Format: Article
• Language: English
• Subjects: 5-Methylcytosine; Analytical, structural and metabolic biochemistry; Animals; Base Sequence; Biological and medical sciences; Cell Nucleus - metabolism; Cell-Free System; Cellular differentiation; Chick Embryo; Cytosine - analogs & derivatives; Cytosine - metabolism; DNA; DNA - metabolism; DNA Polymerase I - metabolism; DNA Repair; Dna, deoxyribonucleoproteins; Embryos; Enzymes; Fundamental and applied biological sciences. Psychology; Gels; Gene Expression Regulation; In Vitro Techniques; Methylation; Molecular Sequence Data; Nucleic acids; Oligodeoxyribonucleotides - chemistry; Oligonucleotides; Reaction products; Sequencing
• ISSN: 0027-8424; 1091-6490
• DOI: 10.1073/pnas.90.10.4684

Here I show that nuclear extracts of chicken embryos can promote the active demethylation of DNA. The evidence shows that in hemimethylated DNA (i.e., methylated on one strand only) demethylation of 5mCpG occurs through nucleotide excision repair. The first step of demethylation is the formation of specific nicks 5' from 5-methyldeoxycytidine. Nicks are also observed in vitro on symmetrically methylated CpGs (i.e., methylated on both strands) but they result in breakage of the oligonucleotide with no repair. No specific nicks are observed on the nonmethylated CpG. Nicks are strictly 5mCpG specific and do not occur on 5mCpC, 5mCpT, 5mCpA, or 6mApT. The effect of nonspecific nuclease(s) has been ruled out. The nicking of mCpG takes place in the presence of 20 mM EDTA irrespective of the nature of the sequence surrounding the 5mCpG. No methylcytosine glycosylase activity could be detected. The repair is aphidicolin and N-ethylmaleimide resistant, suggesting a repair action by DNA polymerase β. In extracts of chicken embryos, the excision repair of mCpG is highest between the 6th and the 12th day of development, whereas it is barely detectable in nuclear extracts from different organs of adults. The possible implications of 5mCpG endonuclease activity in active demethylation of DNA during differentiation is discussed.