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Genetic diversity and antimicrobial susceptibility of Nocardia species among patients with nocardiosis
The aim of this multicenter study was to determine the genetic diversity and antibiotic susceptibility of clinically isolated Nocardia species. One hundred twenty-seven patients with nocardiosis were randomly selected from 5 provinces of Iran. Molecular diagnosis of Nocardia species was performed us...
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Published in: | Scientific reports 2015-12, Vol.5 (1), p.17862-17862, Article 17862 |
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creator | Hashemi-Shahraki, Abodolrazagh Heidarieh, Parvin Bostanabad, Saeed Zaker Hashemzadeh, Mohamad Feizabadi, Mohamad Mehdi Schraufnagel, Dean Mirsaeidi, Mehdi |
description | The aim of this multicenter study was to determine the genetic diversity and antibiotic susceptibility of clinically isolated
Nocardia
species. One hundred twenty-seven patients with nocardiosis were randomly selected from 5 provinces of Iran. Molecular diagnosis of
Nocardia
species was performed using multilocus sequence analysis of gyrase B of the β subunit of DNA topoisomerase (
gyrB
) and 16S rRNA and subunit A of SecA preproteintranslocase (
secA1
). Antimicrobial susceptibility testing was performed following the Clinical and Laboratory Standards Institute recommendations. Thirty-five
N. cyriacigeorgica
, 30
N. asteroides
, 26
N. farcinica
, 12
N. otitidiscaviarum,
and 10
N. abscessus
cultures were studied. All isolates were susceptible to linezolid. All isolates of
N. cyriacigeorgica
,
N. asteroides, N. abscessus and N. otitidiscaviarum
were susceptible to trimethoprim-sulfamethoxazole, while 8% of
N. farcinica
isolates were resistant to this drug. All
N. otitidiscaviarum
isolates were highly resistant to imipenem, but
N. cyriacigeorgica
,
N. asteroides, N. farcinica and N. abscessus
were only moderate resistant. The susceptibility patterns vary with different species of
Nocardia
. Resistance to trimethoprim-sulfamethoxazole in Iran is low and this drug should be first line therapy, unless drug susceptibility testing shows resistance. Linezolid also covers
Nocardia
well and could be a second line agent. |
doi_str_mv | 10.1038/srep17862 |
format | article |
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Nocardia
species. One hundred twenty-seven patients with nocardiosis were randomly selected from 5 provinces of Iran. Molecular diagnosis of
Nocardia
species was performed using multilocus sequence analysis of gyrase B of the β subunit of DNA topoisomerase (
gyrB
) and 16S rRNA and subunit A of SecA preproteintranslocase (
secA1
). Antimicrobial susceptibility testing was performed following the Clinical and Laboratory Standards Institute recommendations. Thirty-five
N. cyriacigeorgica
, 30
N. asteroides
, 26
N. farcinica
, 12
N. otitidiscaviarum,
and 10
N. abscessus
cultures were studied. All isolates were susceptible to linezolid. All isolates of
N. cyriacigeorgica
,
N. asteroides, N. abscessus and N. otitidiscaviarum
were susceptible to trimethoprim-sulfamethoxazole, while 8% of
N. farcinica
isolates were resistant to this drug. All
N. otitidiscaviarum
isolates were highly resistant to imipenem, but
N. cyriacigeorgica
,
N. asteroides, N. farcinica and N. abscessus
were only moderate resistant. The susceptibility patterns vary with different species of
Nocardia
. Resistance to trimethoprim-sulfamethoxazole in Iran is low and this drug should be first line therapy, unless drug susceptibility testing shows resistance. Linezolid also covers
Nocardia
well and could be a second line agent.</description><identifier>ISSN: 2045-2322</identifier><identifier>EISSN: 2045-2322</identifier><identifier>DOI: 10.1038/srep17862</identifier><identifier>PMID: 26638771</identifier><language>eng</language><publisher>London: Nature Publishing Group UK</publisher><subject>13 ; 45 ; 45/23 ; 631/326/325/1506 ; 692/699/255/1318 ; Anti-Infective Agents - pharmacology ; Base Sequence ; Demography ; DNA topoisomerase ; Female ; Genetic diversity ; Genetic Variation ; Geography ; Humanities and Social Sciences ; Humans ; Imipenem ; Linezolid ; Male ; Microbial Sensitivity Tests ; Middle Aged ; multidisciplinary ; Nocardia - drug effects ; Nocardia - genetics ; Nocardia - isolation & purification ; Nocardia Infections - microbiology ; Nocardiosis ; Nucleotide sequence ; Phylogeny ; RNA, Ribosomal, 16S - genetics ; rRNA 16S ; Science ; Species ; Species Specificity ; Sulfamethoxazole ; Trimethoprim ; Trimethoprim-sulfamethoxazole</subject><ispartof>Scientific reports, 2015-12, Vol.5 (1), p.17862-17862, Article 17862</ispartof><rights>The Author(s) 2015</rights><rights>Copyright Nature Publishing Group Dec 2015</rights><rights>Copyright © 2015, Macmillan Publishers Limited 2015 Macmillan Publishers Limited</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c438t-2979ebc3faa2231a8a55e22a76fd9ab735aea5ae129ccf8ebf2a1ccd29d112803</citedby><cites>FETCH-LOGICAL-c438t-2979ebc3faa2231a8a55e22a76fd9ab735aea5ae129ccf8ebf2a1ccd29d112803</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.proquest.com/docview/1806636115/fulltextPDF?pq-origsite=primo$$EPDF$$P50$$Gproquest$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/1806636115?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,881,25732,27903,27904,36991,36992,44569,53769,53771,74872</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/26638771$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Hashemi-Shahraki, Abodolrazagh</creatorcontrib><creatorcontrib>Heidarieh, Parvin</creatorcontrib><creatorcontrib>Bostanabad, Saeed Zaker</creatorcontrib><creatorcontrib>Hashemzadeh, Mohamad</creatorcontrib><creatorcontrib>Feizabadi, Mohamad Mehdi</creatorcontrib><creatorcontrib>Schraufnagel, Dean</creatorcontrib><creatorcontrib>Mirsaeidi, Mehdi</creatorcontrib><title>Genetic diversity and antimicrobial susceptibility of Nocardia species among patients with nocardiosis</title><title>Scientific reports</title><addtitle>Sci Rep</addtitle><addtitle>Sci Rep</addtitle><description>The aim of this multicenter study was to determine the genetic diversity and antibiotic susceptibility of clinically isolated
Nocardia
species. One hundred twenty-seven patients with nocardiosis were randomly selected from 5 provinces of Iran. Molecular diagnosis of
Nocardia
species was performed using multilocus sequence analysis of gyrase B of the β subunit of DNA topoisomerase (
gyrB
) and 16S rRNA and subunit A of SecA preproteintranslocase (
secA1
). Antimicrobial susceptibility testing was performed following the Clinical and Laboratory Standards Institute recommendations. Thirty-five
N. cyriacigeorgica
, 30
N. asteroides
, 26
N. farcinica
, 12
N. otitidiscaviarum,
and 10
N. abscessus
cultures were studied. All isolates were susceptible to linezolid. All isolates of
N. cyriacigeorgica
,
N. asteroides, N. abscessus and N. otitidiscaviarum
were susceptible to trimethoprim-sulfamethoxazole, while 8% of
N. farcinica
isolates were resistant to this drug. All
N. otitidiscaviarum
isolates were highly resistant to imipenem, but
N. cyriacigeorgica
,
N. asteroides, N. farcinica and N. abscessus
were only moderate resistant. The susceptibility patterns vary with different species of
Nocardia
. Resistance to trimethoprim-sulfamethoxazole in Iran is low and this drug should be first line therapy, unless drug susceptibility testing shows resistance. Linezolid also covers
Nocardia
well and could be a second line agent.</description><subject>13</subject><subject>45</subject><subject>45/23</subject><subject>631/326/325/1506</subject><subject>692/699/255/1318</subject><subject>Anti-Infective Agents - pharmacology</subject><subject>Base Sequence</subject><subject>Demography</subject><subject>DNA topoisomerase</subject><subject>Female</subject><subject>Genetic diversity</subject><subject>Genetic Variation</subject><subject>Geography</subject><subject>Humanities and Social Sciences</subject><subject>Humans</subject><subject>Imipenem</subject><subject>Linezolid</subject><subject>Male</subject><subject>Microbial Sensitivity Tests</subject><subject>Middle Aged</subject><subject>multidisciplinary</subject><subject>Nocardia - drug effects</subject><subject>Nocardia - genetics</subject><subject>Nocardia - isolation & purification</subject><subject>Nocardia Infections - microbiology</subject><subject>Nocardiosis</subject><subject>Nucleotide sequence</subject><subject>Phylogeny</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>rRNA 16S</subject><subject>Science</subject><subject>Species</subject><subject>Species Specificity</subject><subject>Sulfamethoxazole</subject><subject>Trimethoprim</subject><subject>Trimethoprim-sulfamethoxazole</subject><issn>2045-2322</issn><issn>2045-2322</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>PIMPY</sourceid><recordid>eNplkV9rFTEQxYMottQ--AUk4IsWrmayf5J9EaTYKhR90ecwm83eTtlN1iRb6bc3l1svVw0MCcyPkzNzGHsJ4h2ISr9P0S2gdCufsFMp6mYjKymfHr1P2HlKd6KcRnY1dM_ZiWzbSisFp2y8dt5lsnygexcT5QeOfiiVaSYbQ0848bQm65ZMPU07IIz8a7AYB0KeFmfJJY5z8Fu-YCbnc-K_KN9yv4dCovSCPRtxSu788T5jP64-fb_8vLn5dv3l8uPNxtaVzhvZqc71thoRpawANTaNkxJVOw4d9qpq0GEpkJ21o3b9KBGsHWQ3AEgtqjP2Ya-7rP3sBlvMRJzMEmnG-GACkvm74-nWbMO9qVsFomuKwJtHgRh-ri5lM1MZfprQu7AmA6putRJKQEFf_4PehTX6Mp4BLcqGW4Cd4Ns9VZaZSlbjwQwIswvQHAIs7Ktj9wfyT1wFuNgDqbT81sWjL_9T-w2T-6gt</recordid><startdate>20151207</startdate><enddate>20151207</enddate><creator>Hashemi-Shahraki, Abodolrazagh</creator><creator>Heidarieh, Parvin</creator><creator>Bostanabad, Saeed Zaker</creator><creator>Hashemzadeh, Mohamad</creator><creator>Feizabadi, Mohamad Mehdi</creator><creator>Schraufnagel, Dean</creator><creator>Mirsaeidi, Mehdi</creator><general>Nature Publishing Group UK</general><general>Nature Publishing Group</general><scope>C6C</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AEUYN</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7P</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20151207</creationdate><title>Genetic diversity and antimicrobial susceptibility of Nocardia species among patients with nocardiosis</title><author>Hashemi-Shahraki, Abodolrazagh ; Heidarieh, Parvin ; Bostanabad, Saeed Zaker ; Hashemzadeh, Mohamad ; Feizabadi, Mohamad Mehdi ; Schraufnagel, Dean ; Mirsaeidi, Mehdi</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c438t-2979ebc3faa2231a8a55e22a76fd9ab735aea5ae129ccf8ebf2a1ccd29d112803</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>13</topic><topic>45</topic><topic>45/23</topic><topic>631/326/325/1506</topic><topic>692/699/255/1318</topic><topic>Anti-Infective Agents - pharmacology</topic><topic>Base Sequence</topic><topic>Demography</topic><topic>DNA topoisomerase</topic><topic>Female</topic><topic>Genetic diversity</topic><topic>Genetic Variation</topic><topic>Geography</topic><topic>Humanities and Social Sciences</topic><topic>Humans</topic><topic>Imipenem</topic><topic>Linezolid</topic><topic>Male</topic><topic>Microbial Sensitivity Tests</topic><topic>Middle Aged</topic><topic>multidisciplinary</topic><topic>Nocardia - drug effects</topic><topic>Nocardia - genetics</topic><topic>Nocardia - isolation & purification</topic><topic>Nocardia Infections - microbiology</topic><topic>Nocardiosis</topic><topic>Nucleotide sequence</topic><topic>Phylogeny</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>rRNA 16S</topic><topic>Science</topic><topic>Species</topic><topic>Species Specificity</topic><topic>Sulfamethoxazole</topic><topic>Trimethoprim</topic><topic>Trimethoprim-sulfamethoxazole</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Hashemi-Shahraki, Abodolrazagh</creatorcontrib><creatorcontrib>Heidarieh, Parvin</creatorcontrib><creatorcontrib>Bostanabad, Saeed Zaker</creatorcontrib><creatorcontrib>Hashemzadeh, Mohamad</creatorcontrib><creatorcontrib>Feizabadi, Mohamad Mehdi</creatorcontrib><creatorcontrib>Schraufnagel, Dean</creatorcontrib><creatorcontrib>Mirsaeidi, Mehdi</creatorcontrib><collection>Springer Open Access</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>ProQuest Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Science Database (Alumni Edition)</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest One Sustainability</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Databases</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Biological Sciences</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Science Database</collection><collection>Biological Science Database</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Scientific reports</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Hashemi-Shahraki, Abodolrazagh</au><au>Heidarieh, Parvin</au><au>Bostanabad, Saeed Zaker</au><au>Hashemzadeh, Mohamad</au><au>Feizabadi, Mohamad Mehdi</au><au>Schraufnagel, Dean</au><au>Mirsaeidi, Mehdi</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genetic diversity and antimicrobial susceptibility of Nocardia species among patients with nocardiosis</atitle><jtitle>Scientific reports</jtitle><stitle>Sci Rep</stitle><addtitle>Sci Rep</addtitle><date>2015-12-07</date><risdate>2015</risdate><volume>5</volume><issue>1</issue><spage>17862</spage><epage>17862</epage><pages>17862-17862</pages><artnum>17862</artnum><issn>2045-2322</issn><eissn>2045-2322</eissn><abstract>The aim of this multicenter study was to determine the genetic diversity and antibiotic susceptibility of clinically isolated
Nocardia
species. One hundred twenty-seven patients with nocardiosis were randomly selected from 5 provinces of Iran. Molecular diagnosis of
Nocardia
species was performed using multilocus sequence analysis of gyrase B of the β subunit of DNA topoisomerase (
gyrB
) and 16S rRNA and subunit A of SecA preproteintranslocase (
secA1
). Antimicrobial susceptibility testing was performed following the Clinical and Laboratory Standards Institute recommendations. Thirty-five
N. cyriacigeorgica
, 30
N. asteroides
, 26
N. farcinica
, 12
N. otitidiscaviarum,
and 10
N. abscessus
cultures were studied. All isolates were susceptible to linezolid. All isolates of
N. cyriacigeorgica
,
N. asteroides, N. abscessus and N. otitidiscaviarum
were susceptible to trimethoprim-sulfamethoxazole, while 8% of
N. farcinica
isolates were resistant to this drug. All
N. otitidiscaviarum
isolates were highly resistant to imipenem, but
N. cyriacigeorgica
,
N. asteroides, N. farcinica and N. abscessus
were only moderate resistant. The susceptibility patterns vary with different species of
Nocardia
. Resistance to trimethoprim-sulfamethoxazole in Iran is low and this drug should be first line therapy, unless drug susceptibility testing shows resistance. Linezolid also covers
Nocardia
well and could be a second line agent.</abstract><cop>London</cop><pub>Nature Publishing Group UK</pub><pmid>26638771</pmid><doi>10.1038/srep17862</doi><tpages>1</tpages><oa>free_for_read</oa></addata></record> |
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source | Publicly Available Content Database; PubMed Central; Free Full-Text Journals in Chemistry; Springer Nature - nature.com Journals - Fully Open Access |
subjects | 13 45 45/23 631/326/325/1506 692/699/255/1318 Anti-Infective Agents - pharmacology Base Sequence Demography DNA topoisomerase Female Genetic diversity Genetic Variation Geography Humanities and Social Sciences Humans Imipenem Linezolid Male Microbial Sensitivity Tests Middle Aged multidisciplinary Nocardia - drug effects Nocardia - genetics Nocardia - isolation & purification Nocardia Infections - microbiology Nocardiosis Nucleotide sequence Phylogeny RNA, Ribosomal, 16S - genetics rRNA 16S Science Species Species Specificity Sulfamethoxazole Trimethoprim Trimethoprim-sulfamethoxazole |
title | Genetic diversity and antimicrobial susceptibility of Nocardia species among patients with nocardiosis |
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