Tc1-like Transposase Thm3 of Silver Carp (Hypophthalmichthys molitrix) Can Mediate Gene Transposition in the Genome of Blunt Snout Bream (Megalobrama amblycephala)

• Published in: G3 : genes - genomes - genetics 2015-12, Vol.5 (12), p.2601-2610
• Main Authors: Guo, Xiu-Ming, Zhang, Qian-Qian, Sun, Yi-Wen, Jiang, Xia-Yun, Zou, Shu-Ming
• Format: Article
• Language: English
• Subjects: Amino Acid Sequence; Animals; Base Sequence; Carps - metabolism; Cyprinidae - classification; Cyprinidae - genetics; DNA Transposable Elements; Genome; Genomics; Investigations; Molecular Sequence Data; Mutagenesis, Insertional; Phylogeny; Sequence Alignment; Transposases - metabolism
• ISSN: 2160-1836; 2160-1836
• DOI: 10.1534/g3.115.020933

Abstract Tc1-like transposons consist of an inverted repeat sequence flanking a transposase gene that exhibits similarity to the mobile DNA element, Tc1, of the nematode, Caenorhabditis elegans. They are widely distributed within vertebrate genomes including teleost fish; however, few active Tc1-like transposases have been discovered. In this study, 17 Tc1-like transposon sequences were isolated from 10 freshwater fish species belonging to the families Cyprinidae, Adrianichthyidae, Cichlidae, and Salmonidae. We conducted phylogenetic analyses of these sequences using previously isolated Tc1-like transposases and report that 16 of these elements comprise a new subfamily of Tc1-like transposons. In particular, we show that one transposon, Thm3 from silver carp (Hypophthalmichthys molitrix; Cyprinidae), can encode a 335-aa transposase with apparently intact domains, containing three to five copies in its genome. We then coinjected donor plasmids harboring 367 bp of the left end and 230 bp of the right end of the nonautonomous silver carp Thm1 cis-element along with capped Thm3 transposase RNA into the embryos of blunt snout bream (Megalobrama amblycephala; one- to two-cell embryos). This experiment revealed that the average integration rate could reach 50.6% in adult fish. Within the blunt snout bream genome, the TA dinucleotide direct repeat, which is the signature of Tc1-like family of transposons, was created adjacent to both ends of Thm1 at the integration sites. Our results indicate that the silver carp Thm3 transposase can mediate gene insertion by transposition within the genome of blunt snout bream genome, and that this occurs with a TA position preference.