Diverse Array of New Viral Sequences Identified in Worldwide Populations of the Asian Citrus Psyllid (Diaphorina citri) Using Viral Metagenomics

• Published in: Journal of virology 2016-03, Vol.90 (5), p.2434-2445
• Main Authors: Nouri, Shahideh, Salem, Nidá, Nigg, Jared C, Falk, Bryce W
• Format: Article
• Language: English
• Subjects: Animals; Biodiversity; Cluster Analysis; Computational Biology; Gene Expression Profiling; Genetic Diversity and Evolution; Hemiptera - virology; Insect Viruses - classification; Insect Viruses - genetics; Insect Viruses - isolation & purification; Metagenomics - methods; Molecular Sequence Data; Phylogeny; Sequence Analysis, RNA
• ISSN: 0022-538X; 1098-5514
• DOI: 10.1128/JVI.02793-15

The Asian citrus psyllid, Diaphorina citri, is the natural vector of the causal agent of Huanglongbing (HLB), or citrus greening disease. Together; HLB and D. citri represent a major threat to world citrus production. As there is no cure for HLB, insect vector management is considered one strategy to help control the disease, and D. citri viruses might be useful. In this study, we used a metagenomic approach to analyze viral sequences associated with the global population of D. citri. By sequencing small RNAs and the transcriptome coupled with bioinformatics analysis, we showed that the virus-like sequences of D. citri are diverse. We identified novel viral sequences belonging to the picornavirus superfamily, the Reoviridae, Parvoviridae, and Bunyaviridae families, and an unclassified positive-sense single-stranded RNA virus. Moreover, a Wolbachia prophage-related sequence was identified. This is the first comprehensive survey to assess the viral community from worldwide populations of an agricultural insect pest. Our results provide valuable information on new putative viruses, some of which may have the potential to be used as biocontrol agents. Insects have the most species of all animals, and are hosts to, and vectors of, a great variety of known and unknown viruses. Some of these most likely have the potential to be important fundamental and/or practical resources. In this study, we used high-throughput next-generation sequencing (NGS) technology and bioinformatics analysis to identify putative viruses associated with Diaphorina citri, the Asian citrus psyllid. D. citri is the vector of the bacterium causing Huanglongbing (HLB), currently the most serious threat to citrus worldwide. Here, we report several novel viral sequences associated with D. citri.