Automated Segmentation of Kidneys from MR Images in Patients with Autosomal Dominant Polycystic Kidney Disease

• Published in: Clinical journal of the American Society of Nephrology 2016-04, Vol.11 (4), p.576-584
• Main Authors: Kim, Youngwoo, Ge, Yinghui, Tao, Cheng, Zhu, Jianbing, Chapman, Arlene B, Torres, Vicente E, Yu, Alan S L, Mrug, Michal, Bennett, William M, Flessner, Michael F, Landsittel, Doug P, Bae, Kyongtae T
• Format: Article
• Language: English
• Subjects: Adult; Female; Humans; Image Enhancement; Kidney - diagnostic imaging; Magnetic Resonance Imaging; Male; Middle Aged; Original; Polycystic Kidney, Autosomal Dominant - diagnostic imaging
• ISSN: 1555-9041; 1555-905X
• DOI: 10.2215/CJN.08300815

Our study developed a fully automated method for segmentation and volumetric measurements of kidneys from magnetic resonance images in patients with autosomal dominant polycystic kidney disease and assessed the performance of the automated method with the reference manual segmentation method. Study patients were selected from the Consortium for Radiologic Imaging Studies of Polycystic Kidney Disease. At the enrollment of the Consortium for Radiologic Imaging Studies of Polycystic Kidney Disease Study in 2000, patients with autosomal dominant polycystic kidney disease were between 15 and 46 years of age with relatively preserved GFRs. Our fully automated segmentation method was on the basis of a spatial prior probability map of the location of kidneys in abdominal magnetic resonance images and regional mapping with total variation regularization and propagated shape constraints that were formulated into a level set framework. T2-weighted magnetic resonance image sets of 120 kidneys were selected from 60 patients with autosomal dominant polycystic kidney disease and divided into the training and test datasets. The performance of the automated method in reference to the manual method was assessed by means of two metrics: Dice similarity coefficient and intraclass correlation coefficient of segmented kidney volume. The training and test sets were swapped for crossvalidation and reanalyzed. Successful segmentation of kidneys was performed with the automated method in all test patients. The segmented kidney volumes ranged from 177.2 to 2634 ml (mean, 885.4±569.7 ml). The mean Dice similarity coefficient ±SD between the automated and manual methods was 0.88±0.08. The mean correlation coefficient between the two segmentation methods for the segmented volume measurements was 0.97 (P