Long non-coding RNA ANRIL regulates inflammatory responses as a novel component of NF-κB pathway

• Published in: RNA biology 2016-01, Vol.13 (1), p.98-108
• Main Authors: Zhou, Xiao, Han, Xiaorui, Wittfeldt, Ann, Sun, Jingzhi, Liu, Chujun, Wang, Xiaoxia, Gan, Li-Ming, Cao, Huiqing, Liang, Zicai
• Format: Article
• Language: English
• Subjects: activation; ANRIL; atherosclerosis; cell function; Cell Line; chromatin; chromatin immunoprecipitation; Clinical Medicine; coronary artery disease; endothelial cells; Endothelial Cells - drug effects; Endothelial Cells - immunology; etiology; gene-expression; genes; human diseases; Human Umbilical Vein Endothelial Cells; Humans; immune-response; immunoprecipitation; inflammation; interleukin-6; Interleukin-6 - genetics; interleukin-8; Interleukin-8 - genetics; Klinisk medicin; loci; long non-coding RNA; loss-of-function mutation; NF-kappa B; NF-kappa B - genetics; NF-κB; non-coding RNA; Promoter Regions, Genetic; Research Paper; risk; RNA, Long Noncoding - genetics; sequence analysis; Signal Transduction - drug effects; therapeutics; transcription factor; transcription factor NF-kappa B; tumor necrosis factor-alpha; Tumor Necrosis Factor-alpha - pharmacology; YY1; YY1 Transcription Factor - genetics
• ISSN: 1547-6286; 1555-8584; 1555-8584
• DOI: 10.1080/15476286.2015.1122164

Antisense Noncoding RNA in the INK4 Locus (ANRIL) is the prime candidate gene at Chr9p21, the well-defined genetic risk locus associated with multiple human diseases including coronary artery disease (CAD), while little is known regarding its role in the pathological processes. Endothelial dysfunction triggers atherosclerotic processes that are causatively linked to CAD. To evaluate the function of ANRIL in human endothelial cells (ECs), we examined ANRIL expression under pathological stimuli and found ANRIL was markedly induced by pro-inflammatory factors. Loss-of-function and chromatin immunoprecipitation approaches revealed that NF-κB mediates TNF-α induced ANRIL expression. RNA sequencing revealed that ANRIL silencing dysregulated expression of inflammatory genes including IL6 and IL8 under TNF-α treatment. We explored the regulatory mechanism of ANRIL on IL6/8 and found that Yin Yang 1 (YY1), an ANRIL binding transcriptional factor revealed by RNA immunoprecipitation, was required for IL6/8 expression under TNF-α treatment. YY1 was enriched at promoter loci of IL6/8 and ANRIL silencing impaired the enrichment, indicating a cooperation between ANRIL and YY1 in the regulation of inflammatory genes. For the first time, we establish the connection between ANRIL and NF-κB pathway and show that ANRIL regulates inflammatory responses through binding with YY1. The newly identified TNF-α-NF-κB-ANRIL/YY1-IL6/8 pathway enhances understanding of the etiology of CAD and provides potential therapeutic target for treatment of CAD.