An In Silico study of TiO2 nanoparticles interaction with twenty standard amino acids in aqueous solution

• Published in: Scientific reports 2016-11, Vol.6 (1), p.37761-37761, Article 37761
• Main Authors: Liu, Shengtang, Meng, Xuan-Yu, Perez-Aguilar, Jose Manuel, Zhou, Ruhong
• Format: Article
• Language: English
• Subjects: 119/118; 631/57/2266; 639/925/928/1066; Amino acids; Aqueous solutions; Biological effects; Free energy; Humanities and Social Sciences; Macromolecules; multidisciplinary; Nanomaterials; Nanoparticles; Nanotechnology; Science; Titanium; Titanium dioxide
• ISSN: 2045-2322; 2045-2322
• DOI: 10.1038/srep37761

Titanium dioxide (TiO 2 ) is probably one of the most widely used nanomaterials, and its extensive exposure may result in potentially adverse biological effects. Yet, the underlying mechanisms of interaction involving TiO 2 NPs and macromolecules, e.g. , proteins, are still not well understood. Here, we perform all-atom molecular dynamics simulations to investigate the interactions between TiO 2 NPs and the twenty standard amino acids in aqueous solution exploiting a newly developed TiO 2 force field. We found that charged amino acids play a dominant role during the process of binding to the TiO 2 surface, with both basic and acidic residues overwhelmingly preferred over the non-charged counterparts. By calculating the Potential Mean Force, we showed that Arg is prone to direct binding onto the NP surface, while Lys needs to overcome a ~2 kT free energy barrier. On the other hand, acidic residues tend to form “water bridges” between their sidechains and TiO 2 surface, thus displaying an indirect binding. Moreover, the overall preferred positions and configurations of different residues are highly dependent on properties of the first and second solvation water. These molecular insights learned from this work might help with a better understanding of the interactions between biomolecules and nanomaterials.