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TIMP-2 SNPs rs7342880 and rs4789936 are linked to risk of knee osteoarthritis in the Chinese Han Population
This study aimed to investigate whether functional polymorphisms in the tissue inhibitors of metalloproteinase-2 (TIMP-2) gene are associated with susceptibility to knee osteoarthritis (OA) in the Chinese Han population. Six TIMP-2 single nucleotide polymorphisms (SNPs) were assayed using MassARRAY...
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Published in: | Oncotarget 2017-01, Vol.8 (1), p.1166-1176 |
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creator | Xu, Pengcheng Guo, Wen Jin, Tianbo Wang, Jihong Fan, Dongsheng Hao, Zengtao Jing, Shangfei Han, ChaoQian Du, Jieli Jiang, Dong Wen, Shuzheng Wang, Jianzhong |
description | This study aimed to investigate whether functional polymorphisms in the tissue inhibitors of metalloproteinase-2 (TIMP-2) gene are associated with susceptibility to knee osteoarthritis (OA) in the Chinese Han population. Six TIMP-2 single nucleotide polymorphisms (SNPs) were assayed using MassARRAY in 300 patients clinically and radiographically diagnosed with knee OA and in 428 controls. Allelic and genotypic frequencies were compared between groups. Logistic regression adjusting for age and gender was used to estimate risk associations between specific genotypes and knee OA by computing odds ratios (ORs) and 95% confidence intervals (95% CIs). We found that allele "A" in rs7342880 was significantly associated with increased risk of knee OA (OR = 1.44, 95%CI = 1.09-1.91, p = 0.035). In addition, in the over-dominant model, rs4789936 correlated with reduced risk of knee OA, adjusting for age and gender (OR = 0.69, 95%CI = 0.49-0.98, p = 0.036). Finally, rs7342880 correlated with increased risk of knee OA in females. This study provides evidence that TIMP-2 is a knee OA susceptibility gene in the Chinese population and a potential diagnostic and preventive marker for the disease. |
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Six TIMP-2 single nucleotide polymorphisms (SNPs) were assayed using MassARRAY in 300 patients clinically and radiographically diagnosed with knee OA and in 428 controls. Allelic and genotypic frequencies were compared between groups. Logistic regression adjusting for age and gender was used to estimate risk associations between specific genotypes and knee OA by computing odds ratios (ORs) and 95% confidence intervals (95% CIs). We found that allele "A" in rs7342880 was significantly associated with increased risk of knee OA (OR = 1.44, 95%CI = 1.09-1.91, p = 0.035). In addition, in the over-dominant model, rs4789936 correlated with reduced risk of knee OA, adjusting for age and gender (OR = 0.69, 95%CI = 0.49-0.98, p = 0.036). Finally, rs7342880 correlated with increased risk of knee OA in females. This study provides evidence that TIMP-2 is a knee OA susceptibility gene in the Chinese population and a potential diagnostic and preventive marker for the disease.</description><identifier>ISSN: 1949-2553</identifier><identifier>EISSN: 1949-2553</identifier><identifier>DOI: 10.18632/oncotarget.13590</identifier><identifier>PMID: 27901480</identifier><language>eng</language><publisher>United States: Impact Journals LLC</publisher><subject>Adult ; Aged ; Alleles ; Asian People - genetics ; China ; Female ; Gene Frequency ; Genetic Association Studies ; Genetic Predisposition to Disease ; Genotype ; Haplotypes ; Humans ; Linkage Disequilibrium ; Male ; Middle Aged ; Osteoarthritis, Knee - genetics ; Osteoarthritis, Knee - pathology ; Polymorphism, Single Nucleotide ; Research Paper ; Tissue Inhibitor of Metalloproteinase-2 - genetics</subject><ispartof>Oncotarget, 2017-01, Vol.8 (1), p.1166-1176</ispartof><rights>Copyright: © 2017 Xu et al. 2017</rights><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c356t-35aeebf645990443b3bfd945e82dbf38be79e7489ddd9b803972e821e80f02763</citedby><cites>FETCH-LOGICAL-c356t-35aeebf645990443b3bfd945e82dbf38be79e7489ddd9b803972e821e80f02763</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC5352044/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC5352044/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,27924,27925,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/27901480$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Xu, Pengcheng</creatorcontrib><creatorcontrib>Guo, Wen</creatorcontrib><creatorcontrib>Jin, Tianbo</creatorcontrib><creatorcontrib>Wang, Jihong</creatorcontrib><creatorcontrib>Fan, Dongsheng</creatorcontrib><creatorcontrib>Hao, Zengtao</creatorcontrib><creatorcontrib>Jing, Shangfei</creatorcontrib><creatorcontrib>Han, ChaoQian</creatorcontrib><creatorcontrib>Du, Jieli</creatorcontrib><creatorcontrib>Jiang, Dong</creatorcontrib><creatorcontrib>Wen, Shuzheng</creatorcontrib><creatorcontrib>Wang, Jianzhong</creatorcontrib><title>TIMP-2 SNPs rs7342880 and rs4789936 are linked to risk of knee osteoarthritis in the Chinese Han Population</title><title>Oncotarget</title><addtitle>Oncotarget</addtitle><description>This study aimed to investigate whether functional polymorphisms in the tissue inhibitors of metalloproteinase-2 (TIMP-2) gene are associated with susceptibility to knee osteoarthritis (OA) in the Chinese Han population. 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This study provides evidence that TIMP-2 is a knee OA susceptibility gene in the Chinese population and a potential diagnostic and preventive marker for the disease.</description><subject>Adult</subject><subject>Aged</subject><subject>Alleles</subject><subject>Asian People - genetics</subject><subject>China</subject><subject>Female</subject><subject>Gene Frequency</subject><subject>Genetic Association Studies</subject><subject>Genetic Predisposition to Disease</subject><subject>Genotype</subject><subject>Haplotypes</subject><subject>Humans</subject><subject>Linkage Disequilibrium</subject><subject>Male</subject><subject>Middle Aged</subject><subject>Osteoarthritis, Knee - genetics</subject><subject>Osteoarthritis, Knee - pathology</subject><subject>Polymorphism, Single Nucleotide</subject><subject>Research Paper</subject><subject>Tissue Inhibitor of Metalloproteinase-2 - genetics</subject><issn>1949-2553</issn><issn>1949-2553</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><recordid>eNpVUctOwzAQtBAIUOEDuCAfuQT8TOwLEqp4VOJRCThbTrKhpqldbBeJvydQnnvZXc3szEqD0AElx1SVnJ0E34Rs4xPkY8qlJhtol2qhCyYl3_wz76D9lJ7JUFJUiulttMMqTahQZBfNHyY304Lh-9tpwjFVXDClCLa-HbaBrjUvsY2Ae-fn0OIccHRpjkOH5x4Ah5Qh2Jhn0WWXsPM4zwCPZ85DAnxlPZ6G5aq32QW_h7Y62yfY_-oj9Hhx_jC-Kq7vLifjs-ui4bLMBZcWoO5KIbUmQvCa112rhQTF2rrjqoZKQyWUbttW14pwXbEBo6BIR1hV8hE6XesuV_UC2gZ8jrY3y-gWNr6ZYJ35j3g3M0_h1Ugu2YfjCB19CcTwsoKUzcKlBvreegirZKgSkgldET5Q6ZraxJBShO7HhhLzmZP5zcl85jTcHP797-fiOxX-Du7Aj7w</recordid><startdate>20170103</startdate><enddate>20170103</enddate><creator>Xu, Pengcheng</creator><creator>Guo, Wen</creator><creator>Jin, Tianbo</creator><creator>Wang, Jihong</creator><creator>Fan, Dongsheng</creator><creator>Hao, Zengtao</creator><creator>Jing, Shangfei</creator><creator>Han, ChaoQian</creator><creator>Du, Jieli</creator><creator>Jiang, Dong</creator><creator>Wen, Shuzheng</creator><creator>Wang, Jianzhong</creator><general>Impact Journals LLC</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20170103</creationdate><title>TIMP-2 SNPs rs7342880 and rs4789936 are linked to risk of knee osteoarthritis in the Chinese Han Population</title><author>Xu, Pengcheng ; Guo, Wen ; Jin, Tianbo ; Wang, Jihong ; Fan, Dongsheng ; Hao, Zengtao ; Jing, Shangfei ; Han, ChaoQian ; Du, Jieli ; Jiang, Dong ; Wen, Shuzheng ; Wang, Jianzhong</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c356t-35aeebf645990443b3bfd945e82dbf38be79e7489ddd9b803972e821e80f02763</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>Adult</topic><topic>Aged</topic><topic>Alleles</topic><topic>Asian People - genetics</topic><topic>China</topic><topic>Female</topic><topic>Gene Frequency</topic><topic>Genetic Association Studies</topic><topic>Genetic Predisposition to Disease</topic><topic>Genotype</topic><topic>Haplotypes</topic><topic>Humans</topic><topic>Linkage Disequilibrium</topic><topic>Male</topic><topic>Middle Aged</topic><topic>Osteoarthritis, Knee - genetics</topic><topic>Osteoarthritis, Knee - pathology</topic><topic>Polymorphism, Single Nucleotide</topic><topic>Research Paper</topic><topic>Tissue Inhibitor of Metalloproteinase-2 - genetics</topic><toplevel>online_resources</toplevel><creatorcontrib>Xu, Pengcheng</creatorcontrib><creatorcontrib>Guo, Wen</creatorcontrib><creatorcontrib>Jin, Tianbo</creatorcontrib><creatorcontrib>Wang, Jihong</creatorcontrib><creatorcontrib>Fan, Dongsheng</creatorcontrib><creatorcontrib>Hao, Zengtao</creatorcontrib><creatorcontrib>Jing, Shangfei</creatorcontrib><creatorcontrib>Han, ChaoQian</creatorcontrib><creatorcontrib>Du, Jieli</creatorcontrib><creatorcontrib>Jiang, Dong</creatorcontrib><creatorcontrib>Wen, Shuzheng</creatorcontrib><creatorcontrib>Wang, Jianzhong</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Oncotarget</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Xu, Pengcheng</au><au>Guo, Wen</au><au>Jin, Tianbo</au><au>Wang, Jihong</au><au>Fan, Dongsheng</au><au>Hao, Zengtao</au><au>Jing, Shangfei</au><au>Han, ChaoQian</au><au>Du, Jieli</au><au>Jiang, Dong</au><au>Wen, Shuzheng</au><au>Wang, Jianzhong</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>TIMP-2 SNPs rs7342880 and rs4789936 are linked to risk of knee osteoarthritis in the Chinese Han Population</atitle><jtitle>Oncotarget</jtitle><addtitle>Oncotarget</addtitle><date>2017-01-03</date><risdate>2017</risdate><volume>8</volume><issue>1</issue><spage>1166</spage><epage>1176</epage><pages>1166-1176</pages><issn>1949-2553</issn><eissn>1949-2553</eissn><abstract>This study aimed to investigate whether functional polymorphisms in the tissue inhibitors of metalloproteinase-2 (TIMP-2) gene are associated with susceptibility to knee osteoarthritis (OA) in the Chinese Han population. Six TIMP-2 single nucleotide polymorphisms (SNPs) were assayed using MassARRAY in 300 patients clinically and radiographically diagnosed with knee OA and in 428 controls. Allelic and genotypic frequencies were compared between groups. Logistic regression adjusting for age and gender was used to estimate risk associations between specific genotypes and knee OA by computing odds ratios (ORs) and 95% confidence intervals (95% CIs). We found that allele "A" in rs7342880 was significantly associated with increased risk of knee OA (OR = 1.44, 95%CI = 1.09-1.91, p = 0.035). In addition, in the over-dominant model, rs4789936 correlated with reduced risk of knee OA, adjusting for age and gender (OR = 0.69, 95%CI = 0.49-0.98, p = 0.036). Finally, rs7342880 correlated with increased risk of knee OA in females. This study provides evidence that TIMP-2 is a knee OA susceptibility gene in the Chinese population and a potential diagnostic and preventive marker for the disease.</abstract><cop>United States</cop><pub>Impact Journals LLC</pub><pmid>27901480</pmid><doi>10.18632/oncotarget.13590</doi><tpages>11</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Adult Aged Alleles Asian People - genetics China Female Gene Frequency Genetic Association Studies Genetic Predisposition to Disease Genotype Haplotypes Humans Linkage Disequilibrium Male Middle Aged Osteoarthritis, Knee - genetics Osteoarthritis, Knee - pathology Polymorphism, Single Nucleotide Research Paper Tissue Inhibitor of Metalloproteinase-2 - genetics |
title | TIMP-2 SNPs rs7342880 and rs4789936 are linked to risk of knee osteoarthritis in the Chinese Han Population |
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