Phylogeography of Sulfate-Reducing Bacteria among Disturbed Sediments, Disclosed by Analysis of the Dissimilatory Sulfite Reductase Genes (dsrAB)

Sediment samples were collected worldwide from 16 locations on four continents (in New York, California, New Jersey, Virginia, Puerto Rico, Venezuela, Italy, Latvia, and South Korea) to assess the extent of the diversity and the distribution patterns of sulfate-reducing bacteria (SRB) in contaminate...

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Published in:Applied and Environmental Microbiology 2005-02, Vol.71 (2), p.1004-1011
Main Authors: Pérez-Jiménez, J. R, Kerkhof, L. J
Format: Article
Language:English
Subjects:
Animal, plant and microbial ecology
Applied ecology
Biological and medical sciences
Chemical compounds
Ecotoxicology, biological effects of pollution
Europe
Fresh Water - microbiology
Fundamental and applied biological sciences. Psychology
Geography
Geologic Sediments - microbiology
Korea
Microbial Ecology
Microbiology
Molecular Sequence Data
Oxidoreductases Acting on Sulfur Group Donors - genetics
Oxidoreductases Acting on Sulfur Group Donors - metabolism
Phylogeny
Polymorphism, Restriction Fragment Length
Sequence Analysis, DNA
Sulfates - metabolism
Sulfur-Reducing Bacteria - enzymology
Sulfur-Reducing Bacteria - genetics
Sulfur-Reducing Bacteria - isolation & purification
Terrestrial environment, soil, air
United States
Venezuela
Water pollution
Water Pollution, Chemical
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description Sediment samples were collected worldwide from 16 locations on four continents (in New York, California, New Jersey, Virginia, Puerto Rico, Venezuela, Italy, Latvia, and South Korea) to assess the extent of the diversity and the distribution patterns of sulfate-reducing bacteria (SRB) in contaminated sediments. The SRB communities were examined by terminal restriction fragment (TRF) length polymorphism (TRFLP) analysis of the dissimilatory sulfite reductase genes (dsrAB) with NdeII digests. The fingerprints of dsrAB genes contained a total of 369 fluorescent TRFs, of which
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A global SRB indicator species of petroleum pollution was not identified. However, several dsrAB gene sequences corresponding to hydrocarbon-degrading isolates or consortium members were detected in geographically widely separated polluted sites. Finally, a cluster analysis of the TRFLP fingerprints indicated that many SRB microbial communities were most similar on the basis of close geographic proximity (tens of kilometers). Yet, on larger scales (hundreds to thousands of kilometers) SRB communities could cluster with geographically widely separated sites and not necessarily with the site with the closest proximity. These data demonstrate that SRB populations do not adhere to a biogeographic distribution pattern similar to that of larger eukaryotic organisms, with the greatest species diversity radiating from the Indo-Pacific region. 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R</creatorcontrib><creatorcontrib>Kerkhof, L. J</creatorcontrib><title>Phylogeography of Sulfate-Reducing Bacteria among Disturbed Sediments, Disclosed by Analysis of the Dissimilatory Sulfite Reductase Genes (dsrAB)</title><title>Applied and Environmental Microbiology</title><addtitle>Appl Environ Microbiol</addtitle><description>Sediment samples were collected worldwide from 16 locations on four continents (in New York, California, New Jersey, Virginia, Puerto Rico, Venezuela, Italy, Latvia, and South Korea) to assess the extent of the diversity and the distribution patterns of sulfate-reducing bacteria (SRB) in contaminated sediments. The SRB communities were examined by terminal restriction fragment (TRF) length polymorphism (TRFLP) analysis of the dissimilatory sulfite reductase genes (dsrAB) with NdeII digests. The fingerprints of dsrAB genes contained a total of 369 fluorescent TRFs, of which &lt;20% were present in the GenBank database. 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R</au><au>Kerkhof, L. J</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Phylogeography of Sulfate-Reducing Bacteria among Disturbed Sediments, Disclosed by Analysis of the Dissimilatory Sulfite Reductase Genes (dsrAB)</atitle><jtitle>Applied and Environmental Microbiology</jtitle><addtitle>Appl Environ Microbiol</addtitle><date>2005-02-01</date><risdate>2005</risdate><volume>71</volume><issue>2</issue><spage>1004</spage><epage>1011</epage><pages>1004-1011</pages><issn>0099-2240</issn><eissn>1098-5336</eissn><coden>AEMIDF</coden><abstract>Sediment samples were collected worldwide from 16 locations on four continents (in New York, California, New Jersey, Virginia, Puerto Rico, Venezuela, Italy, Latvia, and South Korea) to assess the extent of the diversity and the distribution patterns of sulfate-reducing bacteria (SRB) in contaminated sediments. 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source PubMed Central Free; American Society for Microbiology Journals
subjects Animal, plant and microbial ecology
Applied ecology
Biological and medical sciences
Chemical compounds
Ecotoxicology, biological effects of pollution
Europe
Fresh Water - microbiology
Fundamental and applied biological sciences. Psychology
Geography
Geologic Sediments - microbiology
Korea
Microbial Ecology
Microbiology
Molecular Sequence Data
Oxidoreductases Acting on Sulfur Group Donors - genetics
Oxidoreductases Acting on Sulfur Group Donors - metabolism
Phylogeny
Polymorphism, Restriction Fragment Length
Sequence Analysis, DNA
Sulfates - metabolism
Sulfur-Reducing Bacteria - enzymology
Sulfur-Reducing Bacteria - genetics
Sulfur-Reducing Bacteria - isolation & purification
Terrestrial environment, soil, air
United States
Venezuela
Water pollution
Water Pollution, Chemical
title Phylogeography of Sulfate-Reducing Bacteria among Disturbed Sediments, Disclosed by Analysis of the Dissimilatory Sulfite Reductase Genes (dsrAB)
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