Loading…

A draft annotation and overview of the human genome

The recent draft assembly of the human genome provides a unified basis for describing genomic structure and function. The draft is sufficiently accurate to provide useful annotation, enabling direct observations of previously inferred biological phenomena. We report here a functionally annotated hum...

Full description

Saved in:
Bibliographic Details
Published in:Genome biology 2001-01, Vol.2 (7), p.RESEARCH0025-RESEARCH0025, Article research0025.1
Main Authors: Wright, F A, Lemon, W J, Zhao, W D, Sears, R, Zhuo, D, Wang, J P, Yang, H Y, Baer, T, Stredney, D, Spitzner, J, Stutz, A, Krahe, R, Yuan, B
Format: Article
Language:English
Subjects:
Citations: Items that this one cites
Items that cite this one
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
Description
Summary:The recent draft assembly of the human genome provides a unified basis for describing genomic structure and function. The draft is sufficiently accurate to provide useful annotation, enabling direct observations of previously inferred biological phenomena. We report here a functionally annotated human gene index placed directly on the genome. The index is based on the integration of public transcript, protein, and mapping information, supplemented with computational prediction. We describe numerous global features of the genome and examine the relationship of various genetic maps with the assembly. In addition, initial sequence analysis reveals highly ordered chromosomal landscapes associated with paralogous gene clusters and distinct functional compartments. Finally, these annotation data were synthesized to produce observations of gene density and number that accord well with historical estimates. Such a global approach had previously been described only for chromosomes 21 and 22, which together account for 2.2% of the genome. We estimate that the genome contains 65,000-75,000 transcriptional units, with exon sequences comprising 4%. The creation of a comprehensive gene index requires the synthesis of all available computational and experimental evidence.
ISSN:1474-760X
1465-6906
1474-760X
1465-6914
DOI:10.1186/gb-2001-2-7-research0025