Diagnostic application of clinical exome sequencing in Leber congenital amaurosis

• Published in: Molecular vision 2017-09, Vol.23, p.649-659
• Main Authors: Han, Jinu, Rim, John Hoon, Hwang, In Sik, Kim, Jieun, Shin, Saeam, Lee, Seung-Tae, Choi, Jong Rak
• Format: Article
• Language: English
• Subjects: Adult; Alleles; Antigens, Neoplasm - genetics; Diagnosis; DNA Mutational Analysis; DNA-Binding Proteins - genetics; Exome - genetics; Eye Proteins - genetics; Female; Gene frequency; Genetic Association Studies; Guanylate Cyclase - genetics; Guanylate cyclase 1; Heredity; High-Throughput Nucleotide Sequencing; Homeodomain Proteins - genetics; Humans; Infant; Leber congenital amaurosis; Leber Congenital Amaurosis - diagnosis; Leber Congenital Amaurosis - genetics; Male; Mutation; Neoplasm Proteins - genetics; Next-generation sequencing; Nicotinamide-Nucleotide Adenylyltransferase - genetics; Nystagmus; Pedigree; Phenotypes; Population genetics; Proteins - genetics; Receptors, Cell Surface - genetics; Retina; Retinal degeneration; Sequence Analysis, DNA; Trans-Activators - genetics
• ISSN: 1090-0535; 1090-0535

Leber congenital amaurosis (LCA) is a hereditary retinal dystrophy with wide genetic heterogeneity. Next-generation sequencing (NGS) targeting multiple genes can be a good option for the diagnosis of LCA, and we tested a clinical exome panel in patients with LCA. A total of nine unrelated Korean patients with LCA were sequenced using the Illumina TruSight One panel, which targets 4,813 clinically associated genes, followed by confirmation using Sanger sequencing. Patients' clinical information and familial study results were obtained and used for comprehensive interpretation. In all nine patients, we identified pathogenic variations in LCA-associated genes: (n=3), (n=2), (n=2), (n=1), and or . Six patients had one or two mutations in accordance with inheritance patterns, all consistent with clinical phenotypes. Two patients had only one pathogenic mutation in recessive genes ( and ), and the clinical features were specific to disorders associated with those genes. Six patients were solved for genetic causes, and it remains unclear for three patients with the clinical exome panel. With subsequent targeted panel sequencing with 113 genes associated with infantile nystagmus syndrome, a likely pathogenic allele in was detected in one patient. Interestingly, one pathogenic variant (p.Arg237Cys) in was present in three patients, and it had a high allele frequency (0.24%) in the general Korean population, suggesting that could be a major gene responsible for LCA in Koreans. We confirmed that a commercial clinical exome panel can be effectively used in the diagnosis of LCA. Careful interpretation and clinical correlation could promote the successful implementation of clinical exome panels in routine diagnoses of retinal dystrophies, including LCA.