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Whole-genome sequence analysis of Zika virus, amplified from urine of traveler from the Philippines
Zika virus (ZIKV) (genus Flavivirus , family Flaviviridae ) is an emerging pathogen associated with microcephaly and Guillain-Barré syndrome. The rapid spread of ZIKV disease in over 60 countries and the large numbers of travel-associated cases have caused worldwide concern. Thus, intensified survei...
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Published in: | Virus genes 2017-12, Vol.53 (6), p.918-921 |
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creator | Gu, Se Hun Song, Dong Hyun Lee, Daesang Jang, Jeyoun Kim, Min Young Jung, Jaehun Woo, Koung In Kim, Mirang Seog, Woong Oh, Hong Sang Choi, Byung Seop Ahn, Jong-Seong Park, Quehn Jeong, Seong Tae |
description | Zika virus (ZIKV) (genus
Flavivirus
, family
Flaviviridae
) is an emerging pathogen associated with microcephaly and Guillain-Barré syndrome. The rapid spread of ZIKV disease in over 60 countries and the large numbers of travel-associated cases have caused worldwide concern. Thus, intensified surveillance of cases among immigrants and tourists from ZIKV-endemic areas is important for disease control and prevention. In this study, using Next Generation Sequencing, we reported the first whole-genome sequence of ZIKV strain AFMC-U, amplified from the urine of a traveler returning to Korea from the Philippines. Phylogenetic analysis showed geographic-specific clustering. Our results underscore the importance of examining urine in the diagnosis of ZIKV infection. |
doi_str_mv | 10.1007/s11262-017-1500-9 |
format | article |
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Flavivirus
, family
Flaviviridae
) is an emerging pathogen associated with microcephaly and Guillain-Barré syndrome. The rapid spread of ZIKV disease in over 60 countries and the large numbers of travel-associated cases have caused worldwide concern. Thus, intensified surveillance of cases among immigrants and tourists from ZIKV-endemic areas is important for disease control and prevention. In this study, using Next Generation Sequencing, we reported the first whole-genome sequence of ZIKV strain AFMC-U, amplified from the urine of a traveler returning to Korea from the Philippines. Phylogenetic analysis showed geographic-specific clustering. Our results underscore the importance of examining urine in the diagnosis of ZIKV infection.</description><identifier>ISSN: 0920-8569</identifier><identifier>EISSN: 1572-994X</identifier><identifier>DOI: 10.1007/s11262-017-1500-9</identifier><identifier>PMID: 28795266</identifier><language>eng</language><publisher>New York: Springer US</publisher><subject>Biomedical and Life Sciences ; Biomedicine ; Disease control ; Flavivirus ; Genomes ; Guillain-Barre syndrome ; Humans ; Immigrants ; Medical Microbiology ; Microencephaly ; Nucleotide sequence ; Philippines ; Phylogeny ; Plant Sciences ; Republic of Korea ; Travel ; Urine ; Virology ; Whole Genome Sequencing - methods ; Zika virus ; Zika Virus - genetics ; Zika Virus Infection - virology</subject><ispartof>Virus genes, 2017-12, Vol.53 (6), p.918-921</ispartof><rights>The Author(s) 2017</rights><rights>Virus Genes is a copyright of Springer, (2017). All Rights Reserved.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c536t-4993714637d4711a36bb92f913f886880b5d1a5fc6b7a9a59576637227ed856d3</citedby><cites>FETCH-LOGICAL-c536t-4993714637d4711a36bb92f913f886880b5d1a5fc6b7a9a59576637227ed856d3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>230,314,780,784,885,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/28795266$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Gu, Se Hun</creatorcontrib><creatorcontrib>Song, Dong Hyun</creatorcontrib><creatorcontrib>Lee, Daesang</creatorcontrib><creatorcontrib>Jang, Jeyoun</creatorcontrib><creatorcontrib>Kim, Min Young</creatorcontrib><creatorcontrib>Jung, Jaehun</creatorcontrib><creatorcontrib>Woo, Koung In</creatorcontrib><creatorcontrib>Kim, Mirang</creatorcontrib><creatorcontrib>Seog, Woong</creatorcontrib><creatorcontrib>Oh, Hong Sang</creatorcontrib><creatorcontrib>Choi, Byung Seop</creatorcontrib><creatorcontrib>Ahn, Jong-Seong</creatorcontrib><creatorcontrib>Park, Quehn</creatorcontrib><creatorcontrib>Jeong, Seong Tae</creatorcontrib><title>Whole-genome sequence analysis of Zika virus, amplified from urine of traveler from the Philippines</title><title>Virus genes</title><addtitle>Virus Genes</addtitle><addtitle>Virus Genes</addtitle><description>Zika virus (ZIKV) (genus
Flavivirus
, family
Flaviviridae
) is an emerging pathogen associated with microcephaly and Guillain-Barré syndrome. The rapid spread of ZIKV disease in over 60 countries and the large numbers of travel-associated cases have caused worldwide concern. Thus, intensified surveillance of cases among immigrants and tourists from ZIKV-endemic areas is important for disease control and prevention. In this study, using Next Generation Sequencing, we reported the first whole-genome sequence of ZIKV strain AFMC-U, amplified from the urine of a traveler returning to Korea from the Philippines. Phylogenetic analysis showed geographic-specific clustering. Our results underscore the importance of examining urine in the diagnosis of ZIKV infection.</description><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>Disease control</subject><subject>Flavivirus</subject><subject>Genomes</subject><subject>Guillain-Barre syndrome</subject><subject>Humans</subject><subject>Immigrants</subject><subject>Medical Microbiology</subject><subject>Microencephaly</subject><subject>Nucleotide sequence</subject><subject>Philippines</subject><subject>Phylogeny</subject><subject>Plant Sciences</subject><subject>Republic of Korea</subject><subject>Travel</subject><subject>Urine</subject><subject>Virology</subject><subject>Whole Genome Sequencing - methods</subject><subject>Zika virus</subject><subject>Zika Virus - genetics</subject><subject>Zika Virus Infection - virology</subject><issn>0920-8569</issn><issn>1572-994X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><recordid>eNp1kUuLFTEQhYMozp3RH-BGAm5cTDSPzmsjyOALBnShKG5Curv63ozpTk9y-8L8e3PpcRgFV4Gqr06qzkHoGaOvGKX6dWGMK04o04RJSol9gDZMak6sbX48RBtqOSVGKnuCTku5opQaw5vH6IQbbSVXaoO677sUgWxhSiPgAtcLTB1gP_l4U0LBacA_wy-PDyEv5Rz7cY5hCNDjIacRLzlMcGT22R8gQl7L-x3gL7sQwzzXfnmCHg0-Fnh6-56hb-_ffb34SC4_f_h08faSdFKoPWmsFZo1Sui-0Yx5odrW8sEyMRijjKGt7JmXQ6da7a2XVmpVYc419PXIXpyhN6vuvLQj9B1Mda3o5hxGn29c8sH93ZnCzm3TwVWHjFC0Cry8FcipGlH2bgylgxj9BGkpjlmujZCWsoq--Ae9Skuurh0ppQyVQspKsZXqciolw3C3DKPuGKFbI3Q1QneM0Nk68_z-FXcTfzKrAF-BUlvTFvK9r_-r-hv4nacc</recordid><startdate>20171201</startdate><enddate>20171201</enddate><creator>Gu, Se Hun</creator><creator>Song, Dong Hyun</creator><creator>Lee, Daesang</creator><creator>Jang, Jeyoun</creator><creator>Kim, Min Young</creator><creator>Jung, Jaehun</creator><creator>Woo, Koung In</creator><creator>Kim, Mirang</creator><creator>Seog, Woong</creator><creator>Oh, Hong Sang</creator><creator>Choi, Byung Seop</creator><creator>Ahn, Jong-Seong</creator><creator>Park, Quehn</creator><creator>Jeong, Seong Tae</creator><general>Springer US</general><general>Springer Nature B.V</general><scope>C6C</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7TM</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20171201</creationdate><title>Whole-genome sequence analysis of Zika virus, amplified from urine of traveler from the Philippines</title><author>Gu, Se Hun ; Song, Dong Hyun ; Lee, Daesang ; Jang, Jeyoun ; Kim, Min Young ; Jung, Jaehun ; Woo, Koung In ; Kim, Mirang ; Seog, Woong ; Oh, Hong Sang ; Choi, Byung Seop ; Ahn, Jong-Seong ; Park, Quehn ; Jeong, Seong Tae</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c536t-4993714637d4711a36bb92f913f886880b5d1a5fc6b7a9a59576637227ed856d3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>Biomedical and Life Sciences</topic><topic>Biomedicine</topic><topic>Disease control</topic><topic>Flavivirus</topic><topic>Genomes</topic><topic>Guillain-Barre syndrome</topic><topic>Humans</topic><topic>Immigrants</topic><topic>Medical Microbiology</topic><topic>Microencephaly</topic><topic>Nucleotide sequence</topic><topic>Philippines</topic><topic>Phylogeny</topic><topic>Plant Sciences</topic><topic>Republic of Korea</topic><topic>Travel</topic><topic>Urine</topic><topic>Virology</topic><topic>Whole Genome Sequencing - methods</topic><topic>Zika virus</topic><topic>Zika Virus - genetics</topic><topic>Zika Virus Infection - virology</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Gu, Se Hun</creatorcontrib><creatorcontrib>Song, Dong Hyun</creatorcontrib><creatorcontrib>Lee, Daesang</creatorcontrib><creatorcontrib>Jang, Jeyoun</creatorcontrib><creatorcontrib>Kim, Min Young</creatorcontrib><creatorcontrib>Jung, Jaehun</creatorcontrib><creatorcontrib>Woo, Koung In</creatorcontrib><creatorcontrib>Kim, Mirang</creatorcontrib><creatorcontrib>Seog, Woong</creatorcontrib><creatorcontrib>Oh, Hong Sang</creatorcontrib><creatorcontrib>Choi, Byung Seop</creatorcontrib><creatorcontrib>Ahn, Jong-Seong</creatorcontrib><creatorcontrib>Park, Quehn</creatorcontrib><creatorcontrib>Jeong, Seong Tae</creatorcontrib><collection>SpringerOpen website</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>ProQuest Health and Medical</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Public Health Database (Proquest)</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest Central</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>AUTh Library subscriptions: ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>PML(ProQuest Medical Library)</collection><collection>ProQuest Biological Science Journals</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - 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Flavivirus
, family
Flaviviridae
) is an emerging pathogen associated with microcephaly and Guillain-Barré syndrome. The rapid spread of ZIKV disease in over 60 countries and the large numbers of travel-associated cases have caused worldwide concern. Thus, intensified surveillance of cases among immigrants and tourists from ZIKV-endemic areas is important for disease control and prevention. In this study, using Next Generation Sequencing, we reported the first whole-genome sequence of ZIKV strain AFMC-U, amplified from the urine of a traveler returning to Korea from the Philippines. Phylogenetic analysis showed geographic-specific clustering. Our results underscore the importance of examining urine in the diagnosis of ZIKV infection.</abstract><cop>New York</cop><pub>Springer US</pub><pmid>28795266</pmid><doi>10.1007/s11262-017-1500-9</doi><tpages>4</tpages><oa>free_for_read</oa></addata></record> |
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subjects | Biomedical and Life Sciences Biomedicine Disease control Flavivirus Genomes Guillain-Barre syndrome Humans Immigrants Medical Microbiology Microencephaly Nucleotide sequence Philippines Phylogeny Plant Sciences Republic of Korea Travel Urine Virology Whole Genome Sequencing - methods Zika virus Zika Virus - genetics Zika Virus Infection - virology |
title | Whole-genome sequence analysis of Zika virus, amplified from urine of traveler from the Philippines |
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