Two Distinct Regulatory Mechanisms of Transcriptional Initiation in Response to Nutrient Signaling

• Published in: Genetics (Austin) 2018-01, Vol.208 (1), p.191-205
• Main Authors: Ferdoush, Jannatul, Sen, Rwik, Kaja, Amala, Barman, Priyanka, Bhaumik, Sukesh R
• Format: Article
• Language: English
• Subjects: Culture Media; Fungal Proteins - genetics; Fungal Proteins - metabolism; Gene Expression Regulation; Gene Expression Regulation, Fungal; Genes; Genetics; Growth media; Histone acetyltransferase; Homeostasis; Initiation complex; Investigations; Kinases; Metabolism; Nutrients; Nutritional Physiological Phenomena - genetics; Phosphates; Promoter Regions, Genetic; Proteasomes; Proteins; Proton-Phosphate Symporters - genetics; Proton-Phosphate Symporters - metabolism; Recruitment; Regulatory mechanisms (biology); Saccharomyces cerevisiae; Signal Transduction; Signaling; Switches; TFIID protein; Transcription factors; Transcriptional Activation; Yeast; Yeasts - genetics; Yeasts - metabolism
• ISSN: 1943-2631; 0016-6731; 1943-2631
• DOI: 10.1534/genetics.117.300518

SAGA (Spt-Ada-Gcn5-Acetyltransferase) and TFIID (transcription factor IID) have been previously shown to facilitate the formation of the PIC (pre-initiation complex) at the promoters of two distinct sets of genes. Here, we demonstrate that TFIID and SAGA differentially participate in the stimulation of PIC formation (and hence transcriptional initiation) at the promoter of , a gene for the high-affinity inorganic phosphate (P ) transporter for crucial cellular functions, in response to nutrient signaling. We show that transcriptional initiation of occurs predominantly in a TFIID-dependent manner in the absence of P in the growth medium. Such TFIID dependency is mediated via the NuA4 (nucleosome acetyltransferase of H4) histone acetyltransferase (HAT). Intriguingly, transcriptional initiation of also occurs in the presence of P in the growth medium, predominantly via the SAGA complex, but independently of NuA4 HAT. Thus, P in the growth medium switches transcriptional initiation of from NuA4-TFIID to SAGA dependency. Further, we find that both NuA4-TFIID- and SAGA-dependent transcriptional initiations of are facilitated by the 19S proteasome subcomplex or regulatory particle (RP) via enhanced recruitment of the coactivators SAGA and NuA4 HAT, which promote TFIID-independent and -dependent PIC formation for transcriptional initiation, respectively. NuA4 HAT does not regulate activator binding to , but rather facilitates PIC formation for transcriptional initiation in the absence of Pi in the growth medium. On the other hand, SAGA promotes activator recruitment to for transcriptional initiation in the growth medium containing Pi. Collectively, our results demonstrate two distinct stimulatory pathways for PIC formation (and hence transcriptional initiation) at by TFIID, SAGA, NuA4, and 19S RP in the presence and absence of an essential nutrient, P , in the growth media, thus providing new regulatory mechanisms of transcriptional initiation in response to nutrient signaling.