Molecular characterization of phytoplasma associated with four important ornamental plant species in India and identification of natural potential spread sources

• Published in: 3 Biotech 2018-02, Vol.8 (2), p.116-12, Article 116
• Main Authors: Gopala, Rao, G. P.
• Format: Article
• Language: English
• Subjects: Agriculture; Bioinformatics; Biomaterials; Biotechnology; Bougainvillea glabra; Callistephus chinensis; Cancer Research; Candidatus Phytoplasma aurantifolia; Cannabis; Cannabis sativa; Chemistry; Chemistry and Materials Science; Chrysanthemum morifolium; Deoxyribonucleic acid; DNA; Flowers & plants; Hishimonus phycitis; Jasmine; Jasminum sambac; Leaves; Little leaf; Nucleotide sequence; Original; Original Article; Ornamental plants; Parthenium hysterophorus; Phyllody; Phylogeny; Phytoplasma; Polymerase chain reaction; rRNA 16S; Species; Stem Cells; Subgroups; Weeds; Witches' broom; Yellowing
• ISSN: 2190-572X; 2190-5738
• DOI: 10.1007/s13205-018-1126-1

Phytoplasma suspected symptoms of phyllody, witches’ broom, leaf yellowing, stunting and little leaf were observed in Chrysanthemum morifolium, Bougainvillea glabra, Jasminum sambac and Callistephus chinensis during survey of flower nurseries and experimental ornamental fields at Delhi, Maharashtra, Tamil Nadu and Karnataka from 2014 to 2016. Pleomorphic bodies typical to phytoplasma structures were observed in the phloem sieve elements of ultrathin sections of all the four symptomatic ornamental plants (stem tissue) in transmission electron microscope. Amplification of 1.8 and 1.2 kb phytoplasma DNA products was observed in all the four test plants in PCR assays using universal primer pairs P1/P7 followed by nested primer pair R16F2n/R16R2, respectively. Pairwise sequence comparison, phylogeny and virtual RFLP analysis of 16S rDNA sequences confirmed the association of two phytoplasma subgroups (16SrI-B and 16SrII-D) in four ornamental plant species. ‘ Ca. P. aurantifolia ’ subgroup D (16SrII-D) was found associated with chrysanthemum phyllody and leaf yellowing at Delhi and Tamil Nadu, bougainvillea little leaf and yellowing at Delhi and Chinese aster phyllody at Bengaluru, Karnataka. However, jasmine little leaf and yellowing at Bengaluru, Karnataka and chrysanthemum stunting at Pune were found to be associated with ‘ Ca . P. asteris ’ subgroup B-related strains (16SrI-B). The identification of 16SrII-D subgroup phytoplasma infecting bougainvillea and 16SrI-B subgroup infecting jasmine are the new reports to the world. Besides weed species, Cannabis sativa showing witches’ broom in jasmine fields at Bengaluru and Parthenium hysterophorus showing witches’ broom symptoms in chrysanthemum fields at Delhi were identified to be caused by phytoplasma strains classified under subgroups 16SrI-B and 16SrII-D, respectively, by PCR assays and 16Sr DNA sequence comparison analysis. Among the three major leafhopper species identified, only Hishimonas phycitis was identified positive for 16SrI-B and 16SrII-D subgroups of phytoplasmas from chrysanthemum fields at Delhi and jasmine fields at Bengaluru, respectively. The identity of similar phytoplasma strains infecting ornamental species in leafhopper and the weed species in the present study suggested that H. phycitis and weeds may act as potential natural sources for secondary spread of the identified phytoplasma strains.