Human Norovirus NS3 Has RNA Helicase and Chaperoning Activities

• Published in: Journal of virology 2018-03, Vol.92 (5)
• Main Authors: Li, Teng-Feng, Hosmillo, Myra, Schwanke, Hella, Shu, Ting, Wang, Zhaowei, Yin, Lei, Curry, Stephen, Goodfellow, Ian G, Zhou, Xi
• Format: Article
• Language: English
• Subjects: Amino Acid Sequence; Cell Line; Genome and Regulation of Viral Gene Expression; Guanidine - antagonists & inhibitors; Humans; Life Cycle Stages; Molecular Chaperones - drug effects; Molecular Chaperones - genetics; Molecular Chaperones - metabolism; Norovirus - drug effects; Norovirus - enzymology; Norovirus - genetics; Norovirus - growth & development; Nucleoside-Triphosphatase - genetics; Nucleoside-Triphosphatase - metabolism; Protein Binding; Protein Folding; Replicon - drug effects; RNA Helicases - drug effects; RNA Helicases - genetics; RNA Helicases - metabolism; RNA, Viral - chemistry; RNA, Viral - drug effects; RNA, Viral - genetics; RNA, Viral - metabolism; Sequence Alignment; Sequence Analysis; Viral Nonstructural Proteins - chemistry; Viral Nonstructural Proteins - drug effects; Viral Nonstructural Proteins - genetics; Viral Nonstructural Proteins - metabolism; Virus Replication - drug effects; Virus Replication - physiology
• ISSN: 0022-538X; 1098-5514
• DOI: 10.1128/JVI.01606-17

RNA-remodeling proteins, including RNA helicases and chaperones, act to remodel RNA structures and/or protein-RNA interactions and are required for all processes involving RNAs. Although many viruses encode RNA helicases and chaperones, their activities and their roles in infected cells largely remain elusive. Noroviruses are a diverse group of positive-strand RNA viruses in the family and constitute a significant and potentially fatal threat to human health. Here, we report that the protein NS3 encoded by human norovirus has both ATP-dependent RNA helicase activity that unwinds RNA helices and ATP-independent RNA-chaperoning activity that can remodel structured RNAs and facilitate strand annealing. Moreover, NS3 can facilitate viral RNA synthesis by norovirus polymerase. NS3 may therefore play an important role in norovirus RNA replication. Lastly, we demonstrate that the RNA-remodeling activity of NS3 is inhibited by guanidine hydrochloride, an FDA-approved compound, and, more importantly, that it reduces the replication of the norovirus replicon in cultured human cells. Altogether, these findings are the first to demonstrate the presence of RNA-remodeling activities encoded by and highlight the functional significance of NS3 in the noroviral life cycle. Noroviruses are a diverse group of positive-strand RNA viruses, which annually cause hundreds of millions of human infections and over 200,000 deaths worldwide. For RNA viruses, cellular or virus-encoded RNA helicases and/or chaperones have long been considered to play pivotal roles in viral life cycles. However, neither RNA helicase nor chaperoning activity has been demonstrated to be associated with any norovirus-encoded proteins, and it is also unknown whether norovirus replication requires the participation of any viral or cellular RNA helicases/chaperones. We found that a norovirus protein, NS3, not only has ATP-dependent helicase activity, but also acts as an ATP-independent RNA chaperone. Also, NS3 can facilitate viral RNA synthesis, suggesting the important role of NS3 in norovirus replication. Moreover, NS3 activities can be inhibited by an FDA-approved compound, which also suppresses norovirus replicon replication in human cells, raising the possibility that NS3 could be a target for antinoroviral drug development.