Loading…

Dynamics of Posttranslational Modification Systems: Recent Progress and Future Directions

Posttranslational modification of proteins is important for signal transduction, and hence significant effort has gone toward understanding how posttranslational modification networks process information. This involves, on the theory side, analyzing the dynamical systems arising from such networks....

Full description

Saved in:
Bibliographic Details
Published in:Biophysical journal 2018-02, Vol.114 (3), p.507-515
Main Authors: Conradi, Carsten, Shiu, Anne
Format: Article
Language:English
Subjects:
Citations: Items that this one cites
Items that cite this one
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
cited_by cdi_FETCH-LOGICAL-c483t-d8996be00c7621246932e02f191f8d476de47ba6386c275c1cad528dca4f33133
cites cdi_FETCH-LOGICAL-c483t-d8996be00c7621246932e02f191f8d476de47ba6386c275c1cad528dca4f33133
container_end_page 515
container_issue 3
container_start_page 507
container_title Biophysical journal
container_volume 114
creator Conradi, Carsten
Shiu, Anne
description Posttranslational modification of proteins is important for signal transduction, and hence significant effort has gone toward understanding how posttranslational modification networks process information. This involves, on the theory side, analyzing the dynamical systems arising from such networks. Which networks are, for instance, bistable? Which networks admit sustained oscillations? Which parameter values enable such behaviors? In this Biophysical Perspective, we highlight recent progress in this area and point out some important future directions. Along the way, we summarize several techniques for analyzing general networks, such as eliminating variables to obtain steady-state parameterizations, and harnessing results on how incorporating intermediates affects dynamics.
doi_str_mv 10.1016/j.bpj.2017.11.3787
format article
fullrecord <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_5985040</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><els_id>S000634951735083X</els_id><sourcerecordid>2009540494</sourcerecordid><originalsourceid>FETCH-LOGICAL-c483t-d8996be00c7621246932e02f191f8d476de47ba6386c275c1cad528dca4f33133</originalsourceid><addsrcrecordid>eNp9kU9v1DAQxS0EokvhC3BAkbhwSZhxHMdGqBJqKSAVUfHnwMny2k5xlMSLnVTab4_TLRVw4DSy5jdPz-8R8hShQkD-sq-2u76igG2FWNWtaO-RDTaMlgCC3ycbAOBlzWRzRB6l1AMgbQAfkiMqGTIu-YZ8P9tPevQmFaErLkOa56inNOjZh0kPxcdgfefNzbP4sk-zG9Or4rMzbpqLyxiuokup0JMtzpd5ia4489GZlU6PyYNOD8k9uZ3H5Nv526-n78uLT-8-nL65KA0T9VxaISXfOgDTcoo0u6qpA9qhxE5Y1nLrWLvVvBbc0LYxaLRtqLBGs66usa6PyclBd7dsR2dXZ1EPahf9qONeBe3V35vJ_1BX4Vo1UjTAIAu8uBWI4efi0qxGn4wbBj25sCSFMjsUKJBn9Pk_aB-WmINKigLIhgGTLFP0QJkYUoquuzODoNbmVK9yc2ptTiGqtbl89OzPb9yd_K4qA68PgMthXnsXVTLeTcbZm8iVDf5_-r8A3Heqgw</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2009540494</pqid></control><display><type>article</type><title>Dynamics of Posttranslational Modification Systems: Recent Progress and Future Directions</title><source>PubMed Central</source><creator>Conradi, Carsten ; Shiu, Anne</creator><creatorcontrib>Conradi, Carsten ; Shiu, Anne</creatorcontrib><description>Posttranslational modification of proteins is important for signal transduction, and hence significant effort has gone toward understanding how posttranslational modification networks process information. This involves, on the theory side, analyzing the dynamical systems arising from such networks. Which networks are, for instance, bistable? Which networks admit sustained oscillations? Which parameter values enable such behaviors? In this Biophysical Perspective, we highlight recent progress in this area and point out some important future directions. Along the way, we summarize several techniques for analyzing general networks, such as eliminating variables to obtain steady-state parameterizations, and harnessing results on how incorporating intermediates affects dynamics.</description><identifier>ISSN: 0006-3495</identifier><identifier>EISSN: 1542-0086</identifier><identifier>DOI: 10.1016/j.bpj.2017.11.3787</identifier><identifier>PMID: 29414696</identifier><language>eng</language><publisher>United States: Elsevier Inc</publisher><subject>Biophysical ; Dynamical systems ; Information processing ; Intermediates ; Networks ; Oscillations ; Proteins ; Signal transduction ; Transcription factors ; Transduction ; Variables</subject><ispartof>Biophysical journal, 2018-02, Vol.114 (3), p.507-515</ispartof><rights>2017 Biophysical Society</rights><rights>Copyright © 2017 Biophysical Society. Published by Elsevier Inc. All rights reserved.</rights><rights>Copyright Biophysical Society Feb 6, 2018</rights><rights>2017 Biophysical Society. 2017 Biophysical Society</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c483t-d8996be00c7621246932e02f191f8d476de47ba6386c275c1cad528dca4f33133</citedby><cites>FETCH-LOGICAL-c483t-d8996be00c7621246932e02f191f8d476de47ba6386c275c1cad528dca4f33133</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC5985040/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC5985040/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,723,776,780,881,27903,27904,53769,53771</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/29414696$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Conradi, Carsten</creatorcontrib><creatorcontrib>Shiu, Anne</creatorcontrib><title>Dynamics of Posttranslational Modification Systems: Recent Progress and Future Directions</title><title>Biophysical journal</title><addtitle>Biophys J</addtitle><description>Posttranslational modification of proteins is important for signal transduction, and hence significant effort has gone toward understanding how posttranslational modification networks process information. This involves, on the theory side, analyzing the dynamical systems arising from such networks. Which networks are, for instance, bistable? Which networks admit sustained oscillations? Which parameter values enable such behaviors? In this Biophysical Perspective, we highlight recent progress in this area and point out some important future directions. Along the way, we summarize several techniques for analyzing general networks, such as eliminating variables to obtain steady-state parameterizations, and harnessing results on how incorporating intermediates affects dynamics.</description><subject>Biophysical</subject><subject>Dynamical systems</subject><subject>Information processing</subject><subject>Intermediates</subject><subject>Networks</subject><subject>Oscillations</subject><subject>Proteins</subject><subject>Signal transduction</subject><subject>Transcription factors</subject><subject>Transduction</subject><subject>Variables</subject><issn>0006-3495</issn><issn>1542-0086</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><recordid>eNp9kU9v1DAQxS0EokvhC3BAkbhwSZhxHMdGqBJqKSAVUfHnwMny2k5xlMSLnVTab4_TLRVw4DSy5jdPz-8R8hShQkD-sq-2u76igG2FWNWtaO-RDTaMlgCC3ycbAOBlzWRzRB6l1AMgbQAfkiMqGTIu-YZ8P9tPevQmFaErLkOa56inNOjZh0kPxcdgfefNzbP4sk-zG9Or4rMzbpqLyxiuokup0JMtzpd5ia4489GZlU6PyYNOD8k9uZ3H5Nv526-n78uLT-8-nL65KA0T9VxaISXfOgDTcoo0u6qpA9qhxE5Y1nLrWLvVvBbc0LYxaLRtqLBGs66usa6PyclBd7dsR2dXZ1EPahf9qONeBe3V35vJ_1BX4Vo1UjTAIAu8uBWI4efi0qxGn4wbBj25sCSFMjsUKJBn9Pk_aB-WmINKigLIhgGTLFP0QJkYUoquuzODoNbmVK9yc2ptTiGqtbl89OzPb9yd_K4qA68PgMthXnsXVTLeTcbZm8iVDf5_-r8A3Heqgw</recordid><startdate>20180206</startdate><enddate>20180206</enddate><creator>Conradi, Carsten</creator><creator>Shiu, Anne</creator><general>Elsevier Inc</general><general>Biophysical Society</general><general>The Biophysical Society</general><scope>6I.</scope><scope>AAFTH</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QO</scope><scope>7QP</scope><scope>7TK</scope><scope>7TM</scope><scope>7U9</scope><scope>8FD</scope><scope>FR3</scope><scope>H94</scope><scope>K9.</scope><scope>P64</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20180206</creationdate><title>Dynamics of Posttranslational Modification Systems: Recent Progress and Future Directions</title><author>Conradi, Carsten ; Shiu, Anne</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c483t-d8996be00c7621246932e02f191f8d476de47ba6386c275c1cad528dca4f33133</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>Biophysical</topic><topic>Dynamical systems</topic><topic>Information processing</topic><topic>Intermediates</topic><topic>Networks</topic><topic>Oscillations</topic><topic>Proteins</topic><topic>Signal transduction</topic><topic>Transcription factors</topic><topic>Transduction</topic><topic>Variables</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Conradi, Carsten</creatorcontrib><creatorcontrib>Shiu, Anne</creatorcontrib><collection>ScienceDirect Open Access Titles</collection><collection>Elsevier:ScienceDirect:Open Access</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Biotechnology Research Abstracts</collection><collection>Calcium &amp; Calcified Tissue Abstracts</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>ProQuest Health &amp; Medical Complete (Alumni)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Biophysical journal</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Conradi, Carsten</au><au>Shiu, Anne</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Dynamics of Posttranslational Modification Systems: Recent Progress and Future Directions</atitle><jtitle>Biophysical journal</jtitle><addtitle>Biophys J</addtitle><date>2018-02-06</date><risdate>2018</risdate><volume>114</volume><issue>3</issue><spage>507</spage><epage>515</epage><pages>507-515</pages><issn>0006-3495</issn><eissn>1542-0086</eissn><abstract>Posttranslational modification of proteins is important for signal transduction, and hence significant effort has gone toward understanding how posttranslational modification networks process information. This involves, on the theory side, analyzing the dynamical systems arising from such networks. Which networks are, for instance, bistable? Which networks admit sustained oscillations? Which parameter values enable such behaviors? In this Biophysical Perspective, we highlight recent progress in this area and point out some important future directions. Along the way, we summarize several techniques for analyzing general networks, such as eliminating variables to obtain steady-state parameterizations, and harnessing results on how incorporating intermediates affects dynamics.</abstract><cop>United States</cop><pub>Elsevier Inc</pub><pmid>29414696</pmid><doi>10.1016/j.bpj.2017.11.3787</doi><tpages>9</tpages><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 0006-3495
ispartof Biophysical journal, 2018-02, Vol.114 (3), p.507-515
issn 0006-3495
1542-0086
language eng
recordid cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_5985040
source PubMed Central
subjects Biophysical
Dynamical systems
Information processing
Intermediates
Networks
Oscillations
Proteins
Signal transduction
Transcription factors
Transduction
Variables
title Dynamics of Posttranslational Modification Systems: Recent Progress and Future Directions
url http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-26T02%3A20%3A07IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Dynamics%20of%20Posttranslational%20Modification%20Systems:%20Recent%20Progress%20and%20Future%20Directions&rft.jtitle=Biophysical%20journal&rft.au=Conradi,%20Carsten&rft.date=2018-02-06&rft.volume=114&rft.issue=3&rft.spage=507&rft.epage=515&rft.pages=507-515&rft.issn=0006-3495&rft.eissn=1542-0086&rft_id=info:doi/10.1016/j.bpj.2017.11.3787&rft_dat=%3Cproquest_pubme%3E2009540494%3C/proquest_pubme%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c483t-d8996be00c7621246932e02f191f8d476de47ba6386c275c1cad528dca4f33133%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_pqid=2009540494&rft_id=info:pmid/29414696&rfr_iscdi=true