Evolutionary histories of coxsackievirus B5 and swine vesicular disease virus reconstructed by phylodynamic and sequence variation analyses

Coxsackievirus (CV)-B5 is a common human enterovirus reported worldwide; swine vesicular disease virus (SVDV) is a porcine variant of CV-B5. To clarify the transmission dynamics and molecular basis of host switching between CV-B5 and SVDV, we analysed and compared the VP1 and partial 3D pol gene reg...

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Bibliographic Details
Published in:Scientific reports 2018-06, Vol.8 (1), p.8821-12, Article 8821
Main Authors: Huang, Hui-Wen, Chu, Pei-Huan, Pan, Chu-Hsiang, Wang, Chu-Feng, Lin, Chien-Ching, Lu, Po-Liang, Chen, Yao-Shen, Shi, Yong-Ying, Su, Hui-Ju, Chou, Li-Chiu, Lin, Yi-Ying, Lee, Hsiao-Fen, Chen, Bao-Chen, Huang, Tsi-Shu, Tyan, Yu-Chang, Chuang, Chih-Hung, Yen, Yung-Chang, Chu, Pei-Yu
Format: Article
Language:English
Subjects:
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692/4017
692/699/255/2514
Bayesian analysis
Coxsackieviruses
Datasets
Dengue fever
Disease
Epidemics
Epistasis
Genotype & phenotype
Genotypes
Haplotypes
Hogs
Hospitals
Host alternation
Humanities and Social Sciences
Infections
Internal medicine
Laboratories
Medical research
Medicine
multidisciplinary
Mutation
Proteins
RNA polymerase
Science
Science (multidisciplinary)
Surveillance
Swine vesicular disease
Tropism
Viruses
VP1 protein
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Summary:Coxsackievirus (CV)-B5 is a common human enterovirus reported worldwide; swine vesicular disease virus (SVDV) is a porcine variant of CV-B5. To clarify the transmission dynamics and molecular basis of host switching between CV-B5 and SVDV, we analysed and compared the VP1 and partial 3D pol gene regions of these two viruses. Spatiotemporal dynamics of viral transmission were estimated using a Bayesian statistical inference framework. The detected selection events were used to analyse the key molecules associated with host switching. Analyses of VP1 sequences revealed six CV-B5 genotypes (A1–A4 and B1–B2) and three SVDV genotypes (I–III). Analyses of partial 3D pol revealed five clusters (A–E). The genotypes evolved sequentially over different periods, albeit with some overlap. The major hub of CV-B5 transmission was in China whereas the major hubs of SVDV transmission were in Italy. Network analysis based on deduced amino acid sequences showed a diverse extension of the VP1 structural protein, whereas most sequences were clustered into two haplotypes in the partial 3D pol region. Residue 178 of VP1 showed four epistatic interactions with residues known to play essential roles in viral host tropism, cell entry, and viral decoating.
ISSN:2045-2322
2045-2322
DOI:10.1038/s41598-018-27254-y