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Taxonomic diversity of fungi deposited from the atmosphere
Fungi release spores into the global atmosphere. The emitted spores are deposited to the surface of the Earth by sedimentation (dry deposition) and precipitation (wet deposition), and therefore contribute to the global cycling of substances. However, knowledge is scarce regarding the diversities of...
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Published in: | The ISME Journal 2018-08, Vol.12 (8), p.2051-2060 |
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description | Fungi release spores into the global atmosphere. The emitted spores are deposited to the surface of the Earth by sedimentation (dry deposition) and precipitation (wet deposition), and therefore contribute to the global cycling of substances. However, knowledge is scarce regarding the diversities of fungi deposited from the atmosphere. Here, an automatic dry and wet deposition sampler and high-throughput sequencing plus quantitative PCR were used to observe taxonomic diversities and flux densities of atmospheric fungal deposition. Taxon-specific fungal deposition velocities and aerodynamic diameters (
d
a
) were determined using a collocated cascade impactor for volumetric, particle-size-resolved air sampling. Large multicellular spore-producing dothideomycetes (
d
a
≥ 10.0 μm) were predominant in dry deposition, with a mean velocity of 0.80 cm s
–1
for all fungal taxa combined. Higher taxonomic richness was observed in fungal assemblages in wet deposition than in dry deposition, suggesting the presence of fungal taxa that are deposited only in wet form. In wet deposition, agaricomycetes, including mushroom-forming fungi, and sordariomycetes, including plant pathogenic species, were enriched, indicating that such fungal spores serve as nuclei in clouds, and/or are discharged preferentially during precipitation. Moreover, this study confirmed that fungal assemblage memberships and structures were significantly different between dry and wet deposition (
P
-test,
p
<
0.001). Overall, these findings suggest taxon-specific involvement of fungi in precipitation, and provide important insights into potential links between environmental changes that can disturb regional microbial communities (e.g., deforestation) and changes in precipitation patterns that might be mediated by changes in microbial communities in the atmosphere. |
doi_str_mv | 10.1038/s41396-018-0160-7 |
format | article |
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d
a
) were determined using a collocated cascade impactor for volumetric, particle-size-resolved air sampling. Large multicellular spore-producing dothideomycetes (
d
a
≥ 10.0 μm) were predominant in dry deposition, with a mean velocity of 0.80 cm s
–1
for all fungal taxa combined. Higher taxonomic richness was observed in fungal assemblages in wet deposition than in dry deposition, suggesting the presence of fungal taxa that are deposited only in wet form. In wet deposition, agaricomycetes, including mushroom-forming fungi, and sordariomycetes, including plant pathogenic species, were enriched, indicating that such fungal spores serve as nuclei in clouds, and/or are discharged preferentially during precipitation. Moreover, this study confirmed that fungal assemblage memberships and structures were significantly different between dry and wet deposition (
P
-test,
p
<
0.001). Overall, these findings suggest taxon-specific involvement of fungi in precipitation, and provide important insights into potential links between environmental changes that can disturb regional microbial communities (e.g., deforestation) and changes in precipitation patterns that might be mediated by changes in microbial communities in the atmosphere.</description><identifier>ISSN: 1751-7362</identifier><identifier>EISSN: 1751-7370</identifier><identifier>DOI: 10.1038/s41396-018-0160-7</identifier><identifier>PMID: 29849168</identifier><language>eng</language><publisher>London: Nature Publishing Group UK</publisher><subject>38/77 ; 704/106/694/2739 ; 704/158/2445 ; 704/158/2452 ; 704/158/855 ; 704/47 ; Air sampling ; Atmosphere ; Biomedical and Life Sciences ; Communities ; Deforestation ; Deposition ; Dry deposition ; Earth surface ; Ecology ; Environmental changes ; Evolutionary Biology ; Fungi ; Life Sciences ; Microbial activity ; Microbial Ecology ; Microbial Genetics and Genomics ; Microbiology ; Microorganisms ; Next-generation sequencing ; Nuclei ; Plant species ; Precipitation ; Sedimentation ; Spores ; Taxa ; Taxonomy ; Wet deposition</subject><ispartof>The ISME Journal, 2018-08, Vol.12 (8), p.2051-2060</ispartof><rights>The Author(s) 2018</rights><rights>2018. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c536t-328709a7264db12c4253089d207ce8fb5964ddbd732d552db9acd95399c805af3</citedby><cites>FETCH-LOGICAL-c536t-328709a7264db12c4253089d207ce8fb5964ddbd732d552db9acd95399c805af3</cites><orcidid>0000-0002-5969-5500</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6051994/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6051994/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,27924,27925,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/29849168$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Woo, Cheolwoon</creatorcontrib><creatorcontrib>An, Choa</creatorcontrib><creatorcontrib>Xu, Siyu</creatorcontrib><creatorcontrib>Yi, Seung-Muk</creatorcontrib><creatorcontrib>Yamamoto, Naomichi</creatorcontrib><title>Taxonomic diversity of fungi deposited from the atmosphere</title><title>The ISME Journal</title><addtitle>ISME J</addtitle><addtitle>ISME J</addtitle><description>Fungi release spores into the global atmosphere. The emitted spores are deposited to the surface of the Earth by sedimentation (dry deposition) and precipitation (wet deposition), and therefore contribute to the global cycling of substances. However, knowledge is scarce regarding the diversities of fungi deposited from the atmosphere. Here, an automatic dry and wet deposition sampler and high-throughput sequencing plus quantitative PCR were used to observe taxonomic diversities and flux densities of atmospheric fungal deposition. Taxon-specific fungal deposition velocities and aerodynamic diameters (
d
a
) were determined using a collocated cascade impactor for volumetric, particle-size-resolved air sampling. Large multicellular spore-producing dothideomycetes (
d
a
≥ 10.0 μm) were predominant in dry deposition, with a mean velocity of 0.80 cm s
–1
for all fungal taxa combined. Higher taxonomic richness was observed in fungal assemblages in wet deposition than in dry deposition, suggesting the presence of fungal taxa that are deposited only in wet form. In wet deposition, agaricomycetes, including mushroom-forming fungi, and sordariomycetes, including plant pathogenic species, were enriched, indicating that such fungal spores serve as nuclei in clouds, and/or are discharged preferentially during precipitation. Moreover, this study confirmed that fungal assemblage memberships and structures were significantly different between dry and wet deposition (
P
-test,
p
<
0.001). Overall, these findings suggest taxon-specific involvement of fungi in precipitation, and provide important insights into potential links between environmental changes that can disturb regional microbial communities (e.g., deforestation) and changes in precipitation patterns that might be mediated by changes in microbial communities in the atmosphere.</description><subject>38/77</subject><subject>704/106/694/2739</subject><subject>704/158/2445</subject><subject>704/158/2452</subject><subject>704/158/855</subject><subject>704/47</subject><subject>Air sampling</subject><subject>Atmosphere</subject><subject>Biomedical and Life Sciences</subject><subject>Communities</subject><subject>Deforestation</subject><subject>Deposition</subject><subject>Dry deposition</subject><subject>Earth surface</subject><subject>Ecology</subject><subject>Environmental changes</subject><subject>Evolutionary Biology</subject><subject>Fungi</subject><subject>Life Sciences</subject><subject>Microbial activity</subject><subject>Microbial Ecology</subject><subject>Microbial Genetics and Genomics</subject><subject>Microbiology</subject><subject>Microorganisms</subject><subject>Next-generation sequencing</subject><subject>Nuclei</subject><subject>Plant species</subject><subject>Precipitation</subject><subject>Sedimentation</subject><subject>Spores</subject><subject>Taxa</subject><subject>Taxonomy</subject><subject>Wet deposition</subject><issn>1751-7362</issn><issn>1751-7370</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><recordid>eNp1kUtLAzEUhYMotlZ_gBsZcONmNI_Jy4UgxRcU3NR1yCSZdkpnUpMZ0X9vSmt9gItwQ853T-7lAHCK4CWCRFzFAhHJcohEOgzmfA8MEaco54TD_d2d4QE4inEBIeWM8UMwwFIUEjExBNdT_e5b39Qms_WbC7HuPjJfZVXfzurMupVPL85mVfBN1s1dprvGx9XcBXcMDiq9jO5kW0fg5f5uOn7MJ88PT-PbSW4oYV1OsOBQao5ZYUuETYEpgUJaDLlxoiqpTIItLSfYUoptKbWxkhIpjYBUV2QEbja-q75snDWu7YJeqlWoGx0-lNe1-q209VzN_JtikCIpi2RwsTUI_rV3sVNNHY1bLnXrfB8VhgWXSFK4Rs__oAvfhzatlyiOaIGYFIlCG8oEH2Nw1W4YBNU6GbVJRqVk1DoZxVPP2c8tdh1fUSQAb4CYpHbmwvfX_7t-AlUAmRA</recordid><startdate>20180801</startdate><enddate>20180801</enddate><creator>Woo, Cheolwoon</creator><creator>An, Choa</creator><creator>Xu, Siyu</creator><creator>Yi, Seung-Muk</creator><creator>Yamamoto, Naomichi</creator><general>Nature Publishing Group UK</general><general>Nature Publishing Group</general><scope>C6C</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7SN</scope><scope>7ST</scope><scope>7T7</scope><scope>7TM</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PATMY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PYCSY</scope><scope>SOI</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-5969-5500</orcidid></search><sort><creationdate>20180801</creationdate><title>Taxonomic diversity of fungi deposited from the atmosphere</title><author>Woo, Cheolwoon ; 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The emitted spores are deposited to the surface of the Earth by sedimentation (dry deposition) and precipitation (wet deposition), and therefore contribute to the global cycling of substances. However, knowledge is scarce regarding the diversities of fungi deposited from the atmosphere. Here, an automatic dry and wet deposition sampler and high-throughput sequencing plus quantitative PCR were used to observe taxonomic diversities and flux densities of atmospheric fungal deposition. Taxon-specific fungal deposition velocities and aerodynamic diameters (
d
a
) were determined using a collocated cascade impactor for volumetric, particle-size-resolved air sampling. Large multicellular spore-producing dothideomycetes (
d
a
≥ 10.0 μm) were predominant in dry deposition, with a mean velocity of 0.80 cm s
–1
for all fungal taxa combined. Higher taxonomic richness was observed in fungal assemblages in wet deposition than in dry deposition, suggesting the presence of fungal taxa that are deposited only in wet form. In wet deposition, agaricomycetes, including mushroom-forming fungi, and sordariomycetes, including plant pathogenic species, were enriched, indicating that such fungal spores serve as nuclei in clouds, and/or are discharged preferentially during precipitation. Moreover, this study confirmed that fungal assemblage memberships and structures were significantly different between dry and wet deposition (
P
-test,
p
<
0.001). Overall, these findings suggest taxon-specific involvement of fungi in precipitation, and provide important insights into potential links between environmental changes that can disturb regional microbial communities (e.g., deforestation) and changes in precipitation patterns that might be mediated by changes in microbial communities in the atmosphere.</abstract><cop>London</cop><pub>Nature Publishing Group UK</pub><pmid>29849168</pmid><doi>10.1038/s41396-018-0160-7</doi><tpages>10</tpages><orcidid>https://orcid.org/0000-0002-5969-5500</orcidid><oa>free_for_read</oa></addata></record> |
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source | OUP_牛津大学出版社OA刊; PubMed Central(OA); Springer Link |
subjects | 38/77 704/106/694/2739 704/158/2445 704/158/2452 704/158/855 704/47 Air sampling Atmosphere Biomedical and Life Sciences Communities Deforestation Deposition Dry deposition Earth surface Ecology Environmental changes Evolutionary Biology Fungi Life Sciences Microbial activity Microbial Ecology Microbial Genetics and Genomics Microbiology Microorganisms Next-generation sequencing Nuclei Plant species Precipitation Sedimentation Spores Taxa Taxonomy Wet deposition |
title | Taxonomic diversity of fungi deposited from the atmosphere |
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