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Urinary peptide panel for prognostic assessment of bladder cancer relapse
Non-invasive tools stratifying bladder cancer (BC) patients according to the risk of relapse are urgently needed to guide clinical intervention. As a follow-up to the previously published study on CE-MS-based urinary biomarkers for BC detection and recurrence monitoring, we expanded the investigatio...
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Published in: | Scientific reports 2019-05, Vol.9 (1), p.7635-7635, Article 7635 |
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description | Non-invasive tools stratifying bladder cancer (BC) patients according to the risk of relapse are urgently needed to guide clinical intervention. As a follow-up to the previously published study on CE-MS-based urinary biomarkers for BC detection and recurrence monitoring, we expanded the investigation towards BC patients with longitudinal data. Profiling datasets of BC patients with follow-up information regarding the relapse status were investigated. The peptidomics dataset (n = 98) was split into training and test set. Cox regression was utilized for feature selection in the training set. Investigation of the entire training set at the single peptide level revealed 36 peptides being strong independent prognostic markers of disease relapse. Those features were further integrated into a Random Forest-based model evaluating the risk of relapse for BC patients. Performance of the model was assessed in the test cohort, showing high significance in BC relapse prognosis [HR = 5.76, p-value = 0.0001, c-index = 0.64]. Urinary peptide profiles integrated into a prognostic model allow for quantitative risk assessment of BC relapse highlighting the need for its incorporation in prospective studies to establish its value in the clinical management of BC. |
doi_str_mv | 10.1038/s41598-019-44129-y |
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M. ; Zwarthoff, Ellen C. ; Belczacka, Iwona ; Pejchinovski, Martin ; Vlahou, Antonia ; Mischak, Harald ; Frantzi, Maria</creator><creatorcontrib>Krochmal, Magdalena ; van Kessel, Kim E. M. ; Zwarthoff, Ellen C. ; Belczacka, Iwona ; Pejchinovski, Martin ; Vlahou, Antonia ; Mischak, Harald ; Frantzi, Maria</creatorcontrib><description>Non-invasive tools stratifying bladder cancer (BC) patients according to the risk of relapse are urgently needed to guide clinical intervention. As a follow-up to the previously published study on CE-MS-based urinary biomarkers for BC detection and recurrence monitoring, we expanded the investigation towards BC patients with longitudinal data. Profiling datasets of BC patients with follow-up information regarding the relapse status were investigated. The peptidomics dataset (n = 98) was split into training and test set. Cox regression was utilized for feature selection in the training set. Investigation of the entire training set at the single peptide level revealed 36 peptides being strong independent prognostic markers of disease relapse. Those features were further integrated into a Random Forest-based model evaluating the risk of relapse for BC patients. Performance of the model was assessed in the test cohort, showing high significance in BC relapse prognosis [HR = 5.76, p-value = 0.0001, c-index = 0.64]. Urinary peptide profiles integrated into a prognostic model allow for quantitative risk assessment of BC relapse highlighting the need for its incorporation in prospective studies to establish its value in the clinical management of BC.</description><identifier>ISSN: 2045-2322</identifier><identifier>EISSN: 2045-2322</identifier><identifier>DOI: 10.1038/s41598-019-44129-y</identifier><identifier>PMID: 31114012</identifier><language>eng</language><publisher>London: Nature Publishing Group UK</publisher><subject>692/4017 ; 692/4025/1334 ; 692/53/2422 ; 82/29 ; 82/58 ; Aged ; Biomarkers, Tumor - urine ; Bladder cancer ; Female ; Humanities and Social Sciences ; Humans ; Male ; Middle Aged ; multidisciplinary ; Peptides ; Peptides - urine ; Recurrence ; Risk assessment ; Science ; Science (multidisciplinary) ; Urinary Bladder Neoplasms - pathology ; Urinary Bladder Neoplasms - urine</subject><ispartof>Scientific reports, 2019-05, Vol.9 (1), p.7635-7635, Article 7635</ispartof><rights>The Author(s) 2019</rights><rights>The Author(s) 2019. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c522t-4eaa2e2baaf7dccc9e52515b48e0898b3665f970ee145e863a480450622745953</citedby><cites>FETCH-LOGICAL-c522t-4eaa2e2baaf7dccc9e52515b48e0898b3665f970ee145e863a480450622745953</cites><orcidid>0000-0002-7167-8463</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.proquest.com/docview/2228656093/fulltextPDF?pq-origsite=primo$$EPDF$$P50$$Gproquest$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/2228656093?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,25753,27924,27925,37012,37013,44590,53791,53793,75126</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/31114012$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Krochmal, Magdalena</creatorcontrib><creatorcontrib>van Kessel, Kim E. 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The peptidomics dataset (n = 98) was split into training and test set. Cox regression was utilized for feature selection in the training set. Investigation of the entire training set at the single peptide level revealed 36 peptides being strong independent prognostic markers of disease relapse. Those features were further integrated into a Random Forest-based model evaluating the risk of relapse for BC patients. Performance of the model was assessed in the test cohort, showing high significance in BC relapse prognosis [HR = 5.76, p-value = 0.0001, c-index = 0.64]. 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M.</au><au>Zwarthoff, Ellen C.</au><au>Belczacka, Iwona</au><au>Pejchinovski, Martin</au><au>Vlahou, Antonia</au><au>Mischak, Harald</au><au>Frantzi, Maria</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Urinary peptide panel for prognostic assessment of bladder cancer relapse</atitle><jtitle>Scientific reports</jtitle><stitle>Sci Rep</stitle><addtitle>Sci Rep</addtitle><date>2019-05-21</date><risdate>2019</risdate><volume>9</volume><issue>1</issue><spage>7635</spage><epage>7635</epage><pages>7635-7635</pages><artnum>7635</artnum><issn>2045-2322</issn><eissn>2045-2322</eissn><abstract>Non-invasive tools stratifying bladder cancer (BC) patients according to the risk of relapse are urgently needed to guide clinical intervention. As a follow-up to the previously published study on CE-MS-based urinary biomarkers for BC detection and recurrence monitoring, we expanded the investigation towards BC patients with longitudinal data. Profiling datasets of BC patients with follow-up information regarding the relapse status were investigated. The peptidomics dataset (n = 98) was split into training and test set. Cox regression was utilized for feature selection in the training set. Investigation of the entire training set at the single peptide level revealed 36 peptides being strong independent prognostic markers of disease relapse. Those features were further integrated into a Random Forest-based model evaluating the risk of relapse for BC patients. Performance of the model was assessed in the test cohort, showing high significance in BC relapse prognosis [HR = 5.76, p-value = 0.0001, c-index = 0.64]. 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subjects | 692/4017 692/4025/1334 692/53/2422 82/29 82/58 Aged Biomarkers, Tumor - urine Bladder cancer Female Humanities and Social Sciences Humans Male Middle Aged multidisciplinary Peptides Peptides - urine Recurrence Risk assessment Science Science (multidisciplinary) Urinary Bladder Neoplasms - pathology Urinary Bladder Neoplasms - urine |
title | Urinary peptide panel for prognostic assessment of bladder cancer relapse |
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