Pergola-web: a web server for the visualization and analysis of longitudinal behavioral data using repurposed genomics tools and standards

We present a new web application to query and visualize time-series behavioral data: the Pergola web-server. This server provides a user-friendly interface for exploring longitudinal behavioral data taking advantage of the Pergola Python library. Using the server, users can process the data applying...

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Published in:Nucleic acids research 2019-07, Vol.47 (W1), p.W600-W604
Main Authors: Espinosa-Carrasco, Jose, Pulido, Toni Hermoso, Erb, Ionas, Dierssen, Mara, Ponomarenko, Julia, Notredame, Cedric
Format: Article
Language:English
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Behavior
Computer Graphics
Genomics
Internet
Software
Web Server Issue
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container_end_page W604
container_issue W1
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container_title Nucleic acids research
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creator Espinosa-Carrasco, Jose
Pulido, Toni Hermoso
Erb, Ionas
Dierssen, Mara
Ponomarenko, Julia
Notredame, Cedric
description We present a new web application to query and visualize time-series behavioral data: the Pergola web-server. This server provides a user-friendly interface for exploring longitudinal behavioral data taking advantage of the Pergola Python library. Using the server, users can process the data applying some basic operations, such as binning or grouping, while formatting the data into existing genomic formats. Thanks to this repurposing of genomics standards, the application automatically renders an interactive data visualization based on sophisticated genome visualization tools. Our tool allows behavioral scientists to share, display and navigate complex behavioral data comprising multiple individuals and multiple data types, in a scalable and flexible manner. A download option allows for further analysis using genomic tools. The server can be a great resource for the field in a time where behavioral science is entering a data-intensive cycle thanks to high-throughput behavioral phenotyping platforms. Pergola is publicly available at http://pergola.crg.eu/.
doi_str_mv 10.1093/nar/gkz414
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source Open Access: PubMed Central; Open Access: Oxford University Press Open Journals
subjects Behavior
Computer Graphics
Genomics
Internet
Software
Web Server Issue
title Pergola-web: a web server for the visualization and analysis of longitudinal behavioral data using repurposed genomics tools and standards
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