Label-free visualization and characterization of extracellular vesicles in breast cancer

• Published in: Proceedings of the National Academy of Sciences - PNAS 2019-11, Vol.116 (48), p.24012-24018
• Main Authors: You, Sixian, Barkalifa, Ronit, Chaney, Eric J., Tu, Haohua, Park, Jaena, Sorrells, Janet Elise, Sun, Yi, Liu, Yuan-Zhi, Yang, Lin, Chen, Danny Z., Marjanovic, Marina, Sinha, Saurabh, Boppart, Stephen A.
• Format: Article
• Language: English
• Subjects: Animals; Artificial neural networks; Biological Sciences; Breast cancer; Breast Neoplasms - pathology; Extracellular vesicles; Extracellular Vesicles - ultrastructure; Humans; Image Processing, Computer-Assisted - methods; Image segmentation; Logistic Models; Metabolism; NAD; Neural networks; Neural Networks, Computer; Physical Sciences; Rats; Spatial analysis; Spatial distribution; Subpopulations; Therapeutic applications; Tumors
• ISSN: 0027-8424; 1091-6490
• DOI: 10.1073/pnas.1909243116

Despite extensive interest, extracellular vesicle (EV) research remains technically challenging. One of the unexplored gaps in EV research has been the inability to characterize the spatially and functionally heterogeneous populations of EVs based on their metabolic profile. In this paper, we utilize the intrinsic optical metabolic and structural contrast of EVs and demonstrate in vivo/in situ characterization of EVs in a variety of unprocessed (pre)clinical samples. With a pixel-level segmentation mask provided by the deep neural network, individual EVs can be analyzed in terms of their optical signature in the context of their spatial distribution. Quantitative analysis of living tumor-bearing animals and fresh excised human breast tissue revealed abundance of NAD(P)H-rich EVs within the tumor, near the tumor boundary, and around vessel structures. Furthermore, the percentage of NAD(P)H-rich EVs is highly correlated with human breast cancer diagnosis, which emphasizes the important role of metabolic imaging for EV characterization as well as its potential for clinical applications. In addition to the characterization of EV properties, we also demonstrate label-free monitoring of EV dynamics (uptake, release, and movement) in live cells and animals. The in situ metabolic profiling capacity of the proposed method together with the finding of increasing NAD(P)H-rich EV subpopulations in breast cancer have the potential for empowering applications in basic science and enhancing our understanding of the active metabolic roles that EVs play in cancer progression.