Coding and Non-Coding RNA Abnormalities in Bipolar Disorder

• Published in: Genes 2019-11, Vol.10 (11), p.946
• Main Authors: Luykx, Jurjen J, Giuliani, Fabrizio, Giuliani, Giuliano, Veldink, Jan
• Format: Article
• Language: English
• Subjects: Aged; Aged, 80 and over; Alternative Splicing; Angiogenesis; Biomarkers - metabolism; Bipolar disorder; Bipolar Disorder - diagnosis; Bipolar Disorder - genetics; Bipolar Disorder - pathology; Brain research; Cancer; Case-Control Studies; Central nervous system; Consent; Demethylation; Experiments; Female; Frontal gyrus; Gene expression; Generalized linear models; Genomes; Histone H3; Histones; Humans; Male; Medical research; Middle Aged; Molecular modelling; Netherlands; Non-coding RNA; Patients; Polyadenylation; Prefrontal Cortex - pathology; Protein arrays; Proteins; Replication; RNA, Circular - metabolism; RNA, Long Noncoding - metabolism; RNA-Seq; Vascular system
• ISSN: 2073-4425; 2073-4425
• DOI: 10.3390/genes10110946

The molecular mechanisms underlying bipolar disorder (BPD) have remained largely unknown. Postmortem brain tissue studies comparing BPD patients with healthy controls have produced a heterogeneous array of potentially implicated protein-coding RNAs. We hypothesized that dysregulation of not only coding, but multiple classes of RNA (coding RNA, long non-coding (lnc) RNA, circular (circ) RNA, and/or alternative splicing) underlie the pathogenesis of BPD. Using non-polyadenylated libraries we performed RNA sequencing in postmortem human medial frontal gyrus tissue from BPD patients and healthy controls. Twenty genes, some of which not previously implicated in BPD, were differentially expressed (DE). PCR validation and replication confirmed the implication of these DE genes. Functional in silico analyses identified enrichment of angiogenesis, vascular system development and histone H3-K4 demethylation. In addition, ten lncRNA transcripts were differentially expressed. Furthermore, an overall increased number of alternative splicing events in BPD was detected, as well as an increase in the number of genes carrying alternative splicing events. Finally, a large reservoir of circRNAs populating brain tissue not affected by BPD is described, while in BPD altered levels of two circular transcripts, cNEBL and cEPHA3, are reported. cEPHA3, hitherto unlinked to BPD, is implicated in developmental processes in the central nervous system. Although we did not perform replication analyses of non-coding RNA findings, our findings hint that RNA dysregulation in BPD is not limited to coding regions, opening avenues for future pharmacological investigations and biomarker research.