Differential Expression Gene Explorer (DrEdGE): a tool for generating interactive online visualizations of gene expression datasets

Abstract Summary Differential Expression Gene Explorer (DrEdGE) is a web-based tool that guides genomicists through easily creating interactive online data visualizations, which colleagues can query according to their own conditions to discover genes, samples or patterns of interest. We demonstrate...

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Bibliographic Details
Published in:Bioinformatics 2020-04, Vol.36 (8), p.2581-2583
Main Authors: Tintori, Sophia C, Golden, Patrick, Goldstein, Bob
Format: Article
Language:English
Subjects:
Animals
Applications Notes
Genomics
Humans
Mice
Software
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Description
Summary:Abstract Summary Differential Expression Gene Explorer (DrEdGE) is a web-based tool that guides genomicists through easily creating interactive online data visualizations, which colleagues can query according to their own conditions to discover genes, samples or patterns of interest. We demonstrate DrEdGE’s features with three example websites generated from publicly available datasets—human neuronal tissue, mouse embryonic tissue and Caenorhabditis elegans whole embryos. DrEdGE increases the utility of large genomics datasets by removing technical obstacles to independent exploration. Availability and implementation Freely available at http://dredge.bio.unc.edu. Supplementary information Supplementary data are available at Bioinformatics online.
ISSN:1367-4803
1460-2059
1367-4811
DOI:10.1093/bioinformatics/btz972