The Iron Deficiency Response of Corynebacterium glutamicum and a Link to Thiamine Biosynthesis

• Published in: Applied and environmental microbiology 2020-05, Vol.86 (10)
• Main Authors: Küberl, Andreas, Mengus-Kaya, Aliye, Polen, Tino, Bott, Michael
• Format: Article
• Language: English
• Subjects: Alanine; Biosynthesis; Corynebacterium glutamicum; Dehydrogenase; Dehydrogenases; Gene expression; Genes; Homeostasis; Iron; Iron deficiency; Ketoglutaric acid; L-Alanine; Lactic acid; Metabolites; Nutrient deficiency; Operons; Organic acids; Oxoglutarate dehydrogenase (lipoamide); Physiology; Proteomes; Pyruvic acid; Reactive oxygen species; Regulators; Riboswitches; Secretion; Soil bacteria; Soil microorganisms; Sulfur; Supplements; Thiamine; Toxicity; Transcription; Vitamin B
• ISSN: 0099-2240; 1098-5336
• DOI: 10.1128/AEM.00065-20

The response to iron limitation of the Gram-positive soil bacterium was analyzed with respect to secreted metabolites, the transcriptome, and the proteome. During growth in glucose minimal medium, iron limitation caused a shift from lactate to pyruvate as the major secreted organic acid complemented by l-alanine and 2-oxoglutarate. Transcriptome and proteome analyses revealed that a pronounced iron starvation response governed by the transcriptional regulators DtxR and RipA was detectable in the late, but not in the early, exponential-growth phase. A link between iron starvation and thiamine pyrophosphate (TPP) biosynthesis was uncovered by the strong upregulation of As phosphomethylpyrimidine synthase (ThiC) contains an iron-sulfur cluster, limiting activities of the TPP-dependent pyruvate-2-oxoglutarate dehydrogenase supercomplex probably cause the excretion of pyruvate and 2-oxoglutarate. In line with this explanation, thiamine supplementation could strongly diminish the secretion of these acids. The upregulation of and other genes involved in thiamine biosynthesis and transport is presumably due to TPP riboswitches present at the 5' end of the corresponding operons. The results obtained in this study provide new insights into iron homeostasis in and demonstrate that the metabolic consequences of iron limitation can be due to the iron dependency of coenzyme biosynthesis. Iron is an essential element for most organisms but causes problems due to poor solubility under oxic conditions and due to toxicity by catalyzing the formation of reactive oxygen species (ROS). Therefore, bacteria have evolved complex regulatory networks for iron homeostasis aiming at a sufficient iron supply while minimizing ROS formation. In our study, the responses of the actinobacterium to iron limitation were analyzed, resulting in a detailed view on the processes involved in iron homeostasis in this model organism. In particular, we provide evidence that iron limitation causes TPP deficiency, presumably due to insufficient activity of the iron-dependent phosphomethylpyrimidine synthase (ThiC). TPP deficiency was deduced from the upregulation of genes controlled by a TPP riboswitch and secretion of metabolites caused by insufficient activity of the TPP-dependent enzymes pyruvate dehydrogenase and 2-oxoglutarate dehydrogenase. To our knowledge, the link between iron starvation and thiamine synthesis has not been elaborated previously.