Prediction of survival of HPV16-negative, p16-negative oral cavity cancer patients using a 13-gene signature: A multicenter study using FFPE samples

• Published in: Oral oncology 2020-01, Vol.100, p.104487-104487, Article 104487
• Main Authors: Chen, Chu, Lohavanichbutr, Pawadee, Zhang, Yuzheng, Houck, John R., Upton, Melissa P., Abedi-Ardekani, Behnoush, Agudo, Antonio, Ahrens, Wolfgang, Alemany, Laia, Anantharaman, Devasena, Conway, David I., Futran, Neal D., Holcatova, Ivana, Günther, Kathrin, Hansen, Bo T., Healy, Claire M., Itani, Doha, Kjaerheim, Kristina, Monroe, Marcus M., Thomson, Peter J., Witt, Benjamin L., Nakoneshny, Steven, Peterson, Lisa A., Schwartz, Stephen M., Zarins, Katie R., Hashibe, Mia, Brennan, Paul, Rozek, Laura S., Wolf, Gregory, Dort, Joseph C., Wang, Pei
• Format: Article
• Language: English
• Subjects: Adult; Aged; Aged, 80 and over; Area Under Curve; Biomarkers, Tumor - genetics; Carcinoma, Squamous Cell - genetics; Carcinoma, Squamous Cell - metabolism; Carcinoma, Squamous Cell - pathology; Cyclin-Dependent Kinase Inhibitor p16 - metabolism; Female; Gene Expression Profiling - methods; HPV; Human papillomavirus 16 - isolation & purification; Humans; Male; Middle Aged; Mouth Neoplasms - genetics; Mouth Neoplasms - metabolism; Mouth Neoplasms - pathology; Neoplasm Staging; Oral cancer; Oral cavity cancer; P16; Paraffin Embedding; Prognosis; Prognostic gene signature; Sequence Analysis, RNA; Survival Analysis; Tissue Fixation; Young Adult
• ISSN: 1368-8375; 1879-0593
• DOI: 10.1016/j.oraloncology.2019.104487

•Studied incident squamous oral cavity cancers in North America and Western Europe.•Focused on patients with HPV16-negative and p16-negative oral cavity cancers.•A 2-phase study of a 13-gene signature for predicting oral cavity cancer survival.•Compared models with and without the signature for early, and late, stage disease.•Substantial improvement in predicting early stage disease survival with signature. To test the performance of an oral cancer prognostic 13-gene signature for the prediction of survival of patients diagnosed with HPV-negative and p16-negative oral cavity cancer. Diagnostic formalin-fixed paraffin-embedded oral cavity cancer tumor samples were obtained from the Fred Hutchinson Cancer Research Center/University of Washington, University of Calgary, University of Michigan, University of Utah, and seven ARCAGE study centers coordinated by the International Agency of Research on Cancer. RNA from 638 Human Papillomavirus (HPV)-negative and p16-negative samples was analyzed for the 13 genes using a NanoString assay. Ridge-penalized Cox regressions were applied to samples randomly split into discovery and validation sets to build models and evaluate the performance of the 13-gene signature in predicting 2-year oral cavity cancer-specific survival overall and separately for patients with early and late stage disease. Among AJCC stage I/II patients, including the 13-gene signature in the model resulted in substantial improvement in the prediction of 2-year oral cavity cancer-specific survival. For models containing age and sex with and without the 13-gene signature score, the areas under the Receiver Operating Characteristic Curve (AUC) and partial AUC were 0.700 vs. 0.537 (p