Xylem systems genetics analysis reveals a key regulator of lignin biosynthesis in Populus deltoides

• Published in: Genome research 2020-08, Vol.30 (8), p.1131-1143
• Main Authors: Balmant, Kelly M, Noble, Jerald D, C Alves, Filipe, Dervinis, Christopher, Conde, Daniel, Schmidt, Henry W, Vazquez, Ana I, Barbazuk, William B, Campos, Gustavo de Los, Resende, Jr, Marcio F R, Kirst, Matias
• Format: Article
• Language: English
• Subjects: Biosynthesis; Cell Wall - metabolism; Cell walls; Gene expression; Gene Expression Profiling; Gene Expression Regulation, Plant - genetics; Genetic analysis; Genome, Plant - genetics; Genomes; Genomic analysis; Genotypes; Lignin; Lignin - biosynthesis; Lignin - genetics; Phenotypes; Plants, Genetically Modified - genetics; Polymorphism, Single Nucleotide - genetics; Populus - genetics; Populus - metabolism; Populus deltoides; Quantitative genetics; Quantitative Trait Loci - genetics; Sequence Analysis, RNA; Transcription Factors - genetics; Transcriptome - genetics; Xylem; Xylem - genetics; Xylem - metabolism
• ISSN: 1088-9051; 1549-5469
• DOI: 10.1101/gr.261438.120

Despite the growing resources and tools for high-throughput characterization and analysis of genomic information, the discovery of the genetic elements that regulate complex traits remains a challenge. Systems genetics is an emerging field that aims to understand the flow of biological information that underlies complex traits from genotype to phenotype. In this study, we used a systems genetics approach to identify and evaluate regulators of the lignin biosynthesis pathway in by combining genome, transcriptome, and phenotype data from a population of 268 unrelated individuals of The discovery of lignin regulators began with the quantitative genetic analysis of the xylem transcriptome and resulted in the detection of 6706 and 4628 significant local- and distant-eQTL associations, respectively. Among the locally regulated genes, we identified the R2R3-MYB transcription factor ( ) as a putative -regulator of the majority of genes in the lignin biosynthesis pathway. The expression of in a diverse population positively correlated with lignin content. Furthermore, overexpression of in transgenic poplar resulted in increased lignin content, as well as altered expression of genes in the lignin biosynthesis pathway. Altogether, our findings indicate that is involved in the control of a transcriptional coexpression network of lignin biosynthesis genes during secondary cell wall formation in .