Structural alphabets for conformational analysis of nucleic acids available at dnatco.datmos.org

A detailed description of the dnatco.datmos.org web server implementing the universal structural alphabet of nucleic acids is presented. It is capable of processing any mmCIF‐ or PDB‐formatted files containing DNA or RNA molecules; these can either be uploaded by the user or supplied as the wwPDB or...

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Bibliographic Details
Published in:Acta crystallographica. Section D, Biological crystallography. Biological crystallography., 2020-09, Vol.76 (9), p.805-813
Main Authors: Černý, Jiří, Božíková, Paulína, Malý, Michal, Tykač, Michal, Biedermannová, Lada, Schneider, Bohdan
Format: Article
Language:English
Subjects:
Acids
Alphabets
annotation
Annotations
Conformational analysis
Databases, Nucleic Acid
Deoxyribonucleic acid
DNA
DNA - chemistry
Internet
Models, Molecular
Nucleic Acid Conformation
Nucleic acids
refinement
Ribonucleic acid
RNA
RNA - chemistry
Servers
Software
structural alphabets
validation
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Description
Summary:A detailed description of the dnatco.datmos.org web server implementing the universal structural alphabet of nucleic acids is presented. It is capable of processing any mmCIF‐ or PDB‐formatted files containing DNA or RNA molecules; these can either be uploaded by the user or supplied as the wwPDB or PDB‐REDO structural database access code. The web server performs an assignment of the nucleic acid conformations and presents the results for the intuitive annotation, validation, modeling and refinement of nucleic acids. The dnatco.datmos.org web server performs an assignment of nucleic acid conformations and presents the results for the intuitive annotation, validation, modeling and refinement of nucleic acids.
ISSN:2059-7983
0907-4449
2059-7983
1399-0047
DOI:10.1107/S2059798320009389