Loading…

TEMPURA: Database of Growth TEMPeratures of Usual and RAre Prokaryotes

Growth temperature is one of the most representative biological parameters for characterizing living organisms. Prokaryotes have been isolated from various temperature environments and show wide diversity in their growth temperatures. We herein constructed a database of growth TEMPeratures of Usual...

Full description

Saved in:
Bibliographic Details
Published in:Microbes and Environments 2020, Vol.35(3), pp.ME20074
Main Authors: Sato, Yu, Okano, Kenji, Kimura, Hiroyuki, Honda, Kohsuke
Format: Article
Language:English
Subjects:
Citations: Items that this one cites
Items that cite this one
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
cited_by cdi_FETCH-LOGICAL-c570t-527a689d621b487f3f6875a711eeb2895b463e751e67d025b3dde053d0ffdfbd3
cites cdi_FETCH-LOGICAL-c570t-527a689d621b487f3f6875a711eeb2895b463e751e67d025b3dde053d0ffdfbd3
container_end_page
container_issue 3
container_start_page ME20074
container_title Microbes and Environments
container_volume 35
creator Sato, Yu
Okano, Kenji
Kimura, Hiroyuki
Honda, Kohsuke
description Growth temperature is one of the most representative biological parameters for characterizing living organisms. Prokaryotes have been isolated from various temperature environments and show wide diversity in their growth temperatures. We herein constructed a database of growth TEMPeratures of Usual and RAre prokaryotes (TEMPURA, http://togodb.org/db/tempura), which contains the minimum, optimum, and maximum growth temperatures of 8,639 prokaryotic strains. Growth temperature information is linked with taxonomy IDs, phylogenies, and genomic information. TEMPURA provides useful information to researchers working on biotechnological applications of extremophiles and their biomolecules as well as those performing fundamental studies on the physiological diversity of prokaryotes.
doi_str_mv 10.1264/jsme2.ME20074
format article
fullrecord <record><control><sourceid>pubmedcentral_cross</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_7511790</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>pubmedcentral_primary_oai_pubmedcentral_nih_gov_7511790</sourcerecordid><originalsourceid>FETCH-LOGICAL-c570t-527a689d621b487f3f6875a711eeb2895b463e751e67d025b3dde053d0ffdfbd3</originalsourceid><addsrcrecordid>eNpVkE9PwkAQxTdGI4oevfcLFPdvt_VgQhDQBCIhcN5su7NQLC3ZLRq_vS00JF5mJvPe_DJ5CD0RPCA04s87vwc6mI8pxpJfoTvCuAw5x-L6NNMwYoT00L33O4wZE5Leoh6jkspE8js0WY3ni_Vy-BK86Vqn2kNQ2WDqqp96G7QaOF0fHfh2vfZHXQS6NMFy6CBYuOpLu9-qBv-AbqwuPDx2vY_Wk_Fq9B7OPqcfo-EszITEdSio1FGcmIiSlMfSMhvFUmhJCEBK40SkPGIgBYFIGkxFyowBLJjB1hqbGtZHr2fu4ZjuwWRQ1k4X6uDyffOJqnSu_itlvlWb6ls1TCIT3ADCMyBzlfcO7OWWYNUGqk6Bqi7Qxj86-3e-1hu4uLWr86yAzs2EYm3pri5qttVOQcn-AORAgD8</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype></control><display><type>article</type><title>TEMPURA: Database of Growth TEMPeratures of Usual and RAre Prokaryotes</title><source>PubMed Central</source><source>EZB Electronic Journals Library</source><creator>Sato, Yu ; Okano, Kenji ; Kimura, Hiroyuki ; Honda, Kohsuke</creator><creatorcontrib>Sato, Yu ; Okano, Kenji ; Kimura, Hiroyuki ; Honda, Kohsuke</creatorcontrib><description>Growth temperature is one of the most representative biological parameters for characterizing living organisms. Prokaryotes have been isolated from various temperature environments and show wide diversity in their growth temperatures. We herein constructed a database of growth TEMPeratures of Usual and RAre prokaryotes (TEMPURA, http://togodb.org/db/tempura), which contains the minimum, optimum, and maximum growth temperatures of 8,639 prokaryotic strains. Growth temperature information is linked with taxonomy IDs, phylogenies, and genomic information. TEMPURA provides useful information to researchers working on biotechnological applications of extremophiles and their biomolecules as well as those performing fundamental studies on the physiological diversity of prokaryotes.</description><identifier>ISSN: 1342-6311</identifier><identifier>EISSN: 1347-4405</identifier><identifier>DOI: 10.1264/jsme2.ME20074</identifier><identifier>PMID: 32727974</identifier><language>eng</language><publisher>Japanese Society of Microbial Ecology / Japanese Society of Soil Microbiology / Taiwan Society of Microbial Ecology / Japanese Society of Plant Microbe Interactions / Japanese Society for Extremophiles</publisher><subject>16S ribosomal RNA ; genome ; growth temperature ; prokaryote ; Short Communication</subject><ispartof>Microbes and Environments, 2020, Vol.35(3), pp.ME20074</ispartof><rights>2020 by Japanese Society of Microbial Ecology / Japanese Society of Soil Microbiology / Taiwan Society of Microbial Ecology / Japanese Society of Plant Microbe Interactions / Japanese Society for Extremophiles.</rights><rights>2020 by Japanese Society of Microbial Ecology / Japanese Society of Soil Microbiology / Taiwan Society of Microbial Ecology / Japanese Society of Plant Microbe Interactions / Japanese Society for Extremophiles. 2020</rights><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c570t-527a689d621b487f3f6875a711eeb2895b463e751e67d025b3dde053d0ffdfbd3</citedby><cites>FETCH-LOGICAL-c570t-527a689d621b487f3f6875a711eeb2895b463e751e67d025b3dde053d0ffdfbd3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7511790/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7511790/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,724,777,781,882,4010,27904,27905,27906,53772,53774</link.rule.ids></links><search><creatorcontrib>Sato, Yu</creatorcontrib><creatorcontrib>Okano, Kenji</creatorcontrib><creatorcontrib>Kimura, Hiroyuki</creatorcontrib><creatorcontrib>Honda, Kohsuke</creatorcontrib><title>TEMPURA: Database of Growth TEMPeratures of Usual and RAre Prokaryotes</title><title>Microbes and Environments</title><addtitle>Microbes Environ.</addtitle><description>Growth temperature is one of the most representative biological parameters for characterizing living organisms. Prokaryotes have been isolated from various temperature environments and show wide diversity in their growth temperatures. We herein constructed a database of growth TEMPeratures of Usual and RAre prokaryotes (TEMPURA, http://togodb.org/db/tempura), which contains the minimum, optimum, and maximum growth temperatures of 8,639 prokaryotic strains. Growth temperature information is linked with taxonomy IDs, phylogenies, and genomic information. TEMPURA provides useful information to researchers working on biotechnological applications of extremophiles and their biomolecules as well as those performing fundamental studies on the physiological diversity of prokaryotes.</description><subject>16S ribosomal RNA</subject><subject>genome</subject><subject>growth temperature</subject><subject>prokaryote</subject><subject>Short Communication</subject><issn>1342-6311</issn><issn>1347-4405</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><recordid>eNpVkE9PwkAQxTdGI4oevfcLFPdvt_VgQhDQBCIhcN5su7NQLC3ZLRq_vS00JF5mJvPe_DJ5CD0RPCA04s87vwc6mI8pxpJfoTvCuAw5x-L6NNMwYoT00L33O4wZE5Leoh6jkspE8js0WY3ni_Vy-BK86Vqn2kNQ2WDqqp96G7QaOF0fHfh2vfZHXQS6NMFy6CBYuOpLu9-qBv-AbqwuPDx2vY_Wk_Fq9B7OPqcfo-EszITEdSio1FGcmIiSlMfSMhvFUmhJCEBK40SkPGIgBYFIGkxFyowBLJjB1hqbGtZHr2fu4ZjuwWRQ1k4X6uDyffOJqnSu_itlvlWb6ls1TCIT3ADCMyBzlfcO7OWWYNUGqk6Bqi7Qxj86-3e-1hu4uLWr86yAzs2EYm3pri5qttVOQcn-AORAgD8</recordid><startdate>2020</startdate><enddate>2020</enddate><creator>Sato, Yu</creator><creator>Okano, Kenji</creator><creator>Kimura, Hiroyuki</creator><creator>Honda, Kohsuke</creator><general>Japanese Society of Microbial Ecology / Japanese Society of Soil Microbiology / Taiwan Society of Microbial Ecology / Japanese Society of Plant Microbe Interactions / Japanese Society for Extremophiles</general><scope>AAYXX</scope><scope>CITATION</scope><scope>5PM</scope></search><sort><creationdate>2020</creationdate><title>TEMPURA: Database of Growth TEMPeratures of Usual and RAre Prokaryotes</title><author>Sato, Yu ; Okano, Kenji ; Kimura, Hiroyuki ; Honda, Kohsuke</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c570t-527a689d621b487f3f6875a711eeb2895b463e751e67d025b3dde053d0ffdfbd3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>16S ribosomal RNA</topic><topic>genome</topic><topic>growth temperature</topic><topic>prokaryote</topic><topic>Short Communication</topic><toplevel>online_resources</toplevel><creatorcontrib>Sato, Yu</creatorcontrib><creatorcontrib>Okano, Kenji</creatorcontrib><creatorcontrib>Kimura, Hiroyuki</creatorcontrib><creatorcontrib>Honda, Kohsuke</creatorcontrib><collection>CrossRef</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Microbes and Environments</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Sato, Yu</au><au>Okano, Kenji</au><au>Kimura, Hiroyuki</au><au>Honda, Kohsuke</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>TEMPURA: Database of Growth TEMPeratures of Usual and RAre Prokaryotes</atitle><jtitle>Microbes and Environments</jtitle><addtitle>Microbes Environ.</addtitle><date>2020</date><risdate>2020</risdate><volume>35</volume><issue>3</issue><spage>ME20074</spage><pages>ME20074-</pages><issn>1342-6311</issn><eissn>1347-4405</eissn><abstract>Growth temperature is one of the most representative biological parameters for characterizing living organisms. Prokaryotes have been isolated from various temperature environments and show wide diversity in their growth temperatures. We herein constructed a database of growth TEMPeratures of Usual and RAre prokaryotes (TEMPURA, http://togodb.org/db/tempura), which contains the minimum, optimum, and maximum growth temperatures of 8,639 prokaryotic strains. Growth temperature information is linked with taxonomy IDs, phylogenies, and genomic information. TEMPURA provides useful information to researchers working on biotechnological applications of extremophiles and their biomolecules as well as those performing fundamental studies on the physiological diversity of prokaryotes.</abstract><pub>Japanese Society of Microbial Ecology / Japanese Society of Soil Microbiology / Taiwan Society of Microbial Ecology / Japanese Society of Plant Microbe Interactions / Japanese Society for Extremophiles</pub><pmid>32727974</pmid><doi>10.1264/jsme2.ME20074</doi><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 1342-6311
ispartof Microbes and Environments, 2020, Vol.35(3), pp.ME20074
issn 1342-6311
1347-4405
language eng
recordid cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_7511790
source PubMed Central; EZB Electronic Journals Library
subjects 16S ribosomal RNA
genome
growth temperature
prokaryote
Short Communication
title TEMPURA: Database of Growth TEMPeratures of Usual and RAre Prokaryotes
url http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-19T20%3A25%3A27IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-pubmedcentral_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=TEMPURA:%20Database%20of%20Growth%20TEMPeratures%20of%20Usual%20and%20RAre%20Prokaryotes&rft.jtitle=Microbes%20and%20Environments&rft.au=Sato,%20Yu&rft.date=2020&rft.volume=35&rft.issue=3&rft.spage=ME20074&rft.pages=ME20074-&rft.issn=1342-6311&rft.eissn=1347-4405&rft_id=info:doi/10.1264/jsme2.ME20074&rft_dat=%3Cpubmedcentral_cross%3Epubmedcentral_primary_oai_pubmedcentral_nih_gov_7511790%3C/pubmedcentral_cross%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c570t-527a689d621b487f3f6875a711eeb2895b463e751e67d025b3dde053d0ffdfbd3%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_id=info:pmid/32727974&rfr_iscdi=true