Comprehensive Analysis of Differential Immunocyte Infiltration and Potential ceRNA Networks Involved in the Development of Atrial Fibrillation

• Published in: BioMed research international 2020, Vol.2020 (2020), p.1-10
• Main Authors: Gao, Hong, Ou, Langhui, Wang, Fengxin, Jiang, Siwei, Li, Xiaolong, Wu, Qiang, Chen, Qianghua, Deng, Huiming, Wu, Jiafeng, Ye, Fuyin
• Format: Article
• Language: English
• Subjects: Algorithms; Analysis; Annotations; Atria; Atrial fibrillation; Atrial Fibrillation - genetics; Atrial Fibrillation - immunology; Atrium; Biomarkers; Cardiac arrhythmia; Care and treatment; CCR2 protein; CD8 antigen; CD8-Positive T-Lymphocytes - immunology; Data analysis; Data processing; Deoxyribonucleic acid; Diagnosis; DNA; DNA methylation; DNA Methylation - genetics; DNA microarrays; Fibrillation; Gene expression; Gene Ontology; Gene Regulatory Networks; Genes; Genomes; Genomics; Humans; Immunocytochemistry; Infiltration; Lymphocytes; Lymphocytes T; Methods; MicroRNAs; Molecular mechanics; Molecular modelling; Monocyte chemoattractant protein 1; Neutrophils; Principal components analysis; Protein interaction; Protein-protein interactions; Proteins; Quality control; Ribonucleic acid; Risk factors; RNA; RNA - genetics; RNA - metabolism; RNA, Long Noncoding - genetics; RNA, Long Noncoding - metabolism; Signal Transduction - genetics
• ISSN: 2314-6133; 2314-6141
• DOI: 10.1155/2020/8021208

This study is aimed at identifying potential molecular mechanisms and candidate biomarkers in the left atrial regions for the diagnosis and treatment of valvular atrial fibrillation (VAF). Multibioinformatics methods, including linear models for microarray analysis (LIMMA), an SVA algorithm, CIBERSORT immune infiltration, and DNA methylation analysis, were employed. In addition, the protein-protein interaction (PPI) network, Gene Ontology (GO), and molecular pathways of differentially expressed genes (DEGs) or differential methylation regions were constructed. In all, compared with the normal rhythm group, 243 different mRNAs (29 downregulated and 214 upregulated) and 26 different lncRNAs (3 downregulated and 23 upregulated) were detected in the left atrium (LA) of atrial fibrillation (AF) patients, and the neutrophil and CD8+ T cell were infiltrated. Additionally, 199 different methylation sites (107 downregulated and 92 upregulated) were also identified based on DNA methylation analysis. After integration, ELOVL2, CCR2, and WEE1 were detected for differentially methylated and differentially transcribed genes. Among them, WEE1 was also a core gene identified by the competing endogenous RNA (ceRNA) network that included WEE1-KRBOX1-AS1-hsa-miR-17-5p, in VAF left atrial tissue. We combined the DNA methylation and transcriptional expression differential analysis and found that WEE1 (cg13365543) may well be a candidate gene regulated by DNA methylation modification. Moreover, KRBOX1-AS1 and WEE1 can compete endogenously and may mediate myocardial tissue infiltration into CD8+ T cells and participate in the AF process.