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Fecal, oral, blood and skin virome of laboratory rabbits
Here, we investigated the fecal, oral, blood, and skin virome of 10 laboratory rabbits using a viral metagenomic method. In the oral samples, we detected a novel polyomavirus (RabPyV), and phylogenetic analysis based on the large T antigen, VP1 and VP2 regions indicated that the novel strain might h...
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| Published in: | Archives of virology 2020-12, Vol.165 (12), p.2847-2856 |
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| Main Authors: | , , , , , , , , , , |
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| container_end_page | 2856 |
| container_issue | 12 |
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| container_title | Archives of virology |
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| creator | Xiao, Yuqing Wang, Hao Feng, Lei Pan, Jiamin Chen, Zeyu Wang, Huiling Yang, Shixing Shen, Quan Wang, Xiaochun Shan, Tongling Zhang, Wen |
| description | Here, we investigated the fecal, oral, blood, and skin virome of 10 laboratory rabbits using a viral metagenomic method. In the oral samples, we detected a novel polyomavirus (RabPyV), and phylogenetic analysis based on the large T antigen, VP1 and VP2 regions indicated that the novel strain might have undergone a recombination event. Recombination analysis based on related genomes confirmed that RabPyV is a multiple recombinant between rodent-like and avian-like polyomaviruses. In fecal samples, three partial or complete genome sequences of viruses belonging to the families
Picobirnaviridae
,
Parvoviridae
,
Microviridae
and
Coronaviridae
were characterized, and phylogenetic trees were constructed based on the predicted amino acid sequences of viral proteins. This study increases the amount of genetic information on viruses present in laboratory rabbits. |
| doi_str_mv | 10.1007/s00705-020-04808-y |
| format | article |
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Picobirnaviridae
,
Parvoviridae
,
Microviridae
and
Coronaviridae
were characterized, and phylogenetic trees were constructed based on the predicted amino acid sequences of viral proteins. This study increases the amount of genetic information on viruses present in laboratory rabbits.</description><identifier>ISSN: 0304-8608</identifier><identifier>EISSN: 1432-8798</identifier><identifier>DOI: 10.1007/s00705-020-04808-y</identifier><identifier>PMID: 33034764</identifier><language>eng</language><publisher>Vienna: Springer Vienna</publisher><subject>Animals ; Animals, Laboratory - virology ; Antigen T (large) ; Biomedical and Life Sciences ; Biomedicine ; Blood - virology ; Feces ; Feces - virology ; Genome, Viral ; Genomes ; Infectious Diseases ; Laboratories ; Medical Microbiology ; Metagenome ; Metagenomics ; Mouth - virology ; Original ; Original Article ; Phylogenetics ; Phylogeny ; Polyomavirus - isolation & purification ; Rabbits - virology ; Recombination ; Skin - virology ; Viral Proteins - genetics ; Virology ; Viruses - classification ; Viruses - isolation & purification ; VP1 protein ; Whole Genome Sequencing</subject><ispartof>Archives of virology, 2020-12, Vol.165 (12), p.2847-2856</ispartof><rights>Springer-Verlag GmbH Austria, part of Springer Nature 2020</rights><rights>Springer-Verlag GmbH Austria, part of Springer Nature 2020.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c474t-8fb1b98a072b9298fb8daea45a3613abd798806cfb54f6b12c92d89f926f4e923</citedby><cites>FETCH-LOGICAL-c474t-8fb1b98a072b9298fb8daea45a3613abd798806cfb54f6b12c92d89f926f4e923</cites><orcidid>0000-0002-9352-6153</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>230,314,780,784,885,27924,27925</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33034764$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Xiao, Yuqing</creatorcontrib><creatorcontrib>Wang, Hao</creatorcontrib><creatorcontrib>Feng, Lei</creatorcontrib><creatorcontrib>Pan, Jiamin</creatorcontrib><creatorcontrib>Chen, Zeyu</creatorcontrib><creatorcontrib>Wang, Huiling</creatorcontrib><creatorcontrib>Yang, Shixing</creatorcontrib><creatorcontrib>Shen, Quan</creatorcontrib><creatorcontrib>Wang, Xiaochun</creatorcontrib><creatorcontrib>Shan, Tongling</creatorcontrib><creatorcontrib>Zhang, Wen</creatorcontrib><title>Fecal, oral, blood and skin virome of laboratory rabbits</title><title>Archives of virology</title><addtitle>Arch Virol</addtitle><addtitle>Arch Virol</addtitle><description>Here, we investigated the fecal, oral, blood, and skin virome of 10 laboratory rabbits using a viral metagenomic method. In the oral samples, we detected a novel polyomavirus (RabPyV), and phylogenetic analysis based on the large T antigen, VP1 and VP2 regions indicated that the novel strain might have undergone a recombination event. Recombination analysis based on related genomes confirmed that RabPyV is a multiple recombinant between rodent-like and avian-like polyomaviruses. In fecal samples, three partial or complete genome sequences of viruses belonging to the families
Picobirnaviridae
,
Parvoviridae
,
Microviridae
and
Coronaviridae
were characterized, and phylogenetic trees were constructed based on the predicted amino acid sequences of viral proteins. This study increases the amount of genetic information on viruses present in laboratory rabbits.</description><subject>Animals</subject><subject>Animals, Laboratory - virology</subject><subject>Antigen T (large)</subject><subject>Biomedical and Life Sciences</subject><subject>Biomedicine</subject><subject>Blood - virology</subject><subject>Feces</subject><subject>Feces - virology</subject><subject>Genome, Viral</subject><subject>Genomes</subject><subject>Infectious Diseases</subject><subject>Laboratories</subject><subject>Medical Microbiology</subject><subject>Metagenome</subject><subject>Metagenomics</subject><subject>Mouth - virology</subject><subject>Original</subject><subject>Original Article</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Polyomavirus - isolation & purification</subject><subject>Rabbits - virology</subject><subject>Recombination</subject><subject>Skin - virology</subject><subject>Viral Proteins - genetics</subject><subject>Virology</subject><subject>Viruses - classification</subject><subject>Viruses - isolation & purification</subject><subject>VP1 protein</subject><subject>Whole Genome Sequencing</subject><issn>0304-8608</issn><issn>1432-8798</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><recordid>eNp9kU1PwzAMhiMEYmPwBzigSlw4UEjz0SQXJDQxQJrEBc5R0qajo2tG0k3av8djY3wcuNhK_Pi1rReh0wxfZRiL6wgB8xQTnGImsUxXe6ifMUpSKZTcR31MMUtljmUPHcU4xRg-KD9EPQqZiZz1kRy5wjSXiQ_raBvvy8S0ZRLf6jZZ1sHPXOKrpDEWiM6HVRKMtXUXj9FBZZroTrZ5gF5Gd8_Dh3T8dP84vB2nBROsS2VlM6ukwYJYRRQ8ZWmcYdzQPKPGlrCpxHlRWc6q3GakUKSUqlIkr5hThA7QzUZ3vrAzVxau7WBVPQ_1zISV9qbWvytt_aonfqkFZzCBgcDFViD494WLnZ7VsXBNY1rnF1ETxpTiinEK6PkfdOoXoYXzgBIZF5yLHCiyoYrgYwyu2i2TYb02Rm-M0WCM_jRGr6Dp7OcZu5YvJwCgGyBCqZ248D37H9kPrZ-Y4w</recordid><startdate>20201201</startdate><enddate>20201201</enddate><creator>Xiao, Yuqing</creator><creator>Wang, Hao</creator><creator>Feng, Lei</creator><creator>Pan, Jiamin</creator><creator>Chen, Zeyu</creator><creator>Wang, Huiling</creator><creator>Yang, Shixing</creator><creator>Shen, Quan</creator><creator>Wang, Xiaochun</creator><creator>Shan, Tongling</creator><creator>Zhang, Wen</creator><general>Springer Vienna</general><general>Springer Nature B.V</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7TK</scope><scope>7TM</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>8AO</scope><scope>8C1</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-9352-6153</orcidid></search><sort><creationdate>20201201</creationdate><title>Fecal, oral, blood and skin virome of laboratory rabbits</title><author>Xiao, Yuqing ; Wang, Hao ; Feng, Lei ; Pan, Jiamin ; Chen, Zeyu ; Wang, Huiling ; Yang, Shixing ; Shen, Quan ; Wang, Xiaochun ; Shan, Tongling ; Zhang, Wen</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c474t-8fb1b98a072b9298fb8daea45a3613abd798806cfb54f6b12c92d89f926f4e923</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Animals</topic><topic>Animals, Laboratory - 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Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Archives of virology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Xiao, Yuqing</au><au>Wang, Hao</au><au>Feng, Lei</au><au>Pan, Jiamin</au><au>Chen, Zeyu</au><au>Wang, Huiling</au><au>Yang, Shixing</au><au>Shen, Quan</au><au>Wang, Xiaochun</au><au>Shan, Tongling</au><au>Zhang, Wen</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Fecal, oral, blood and skin virome of laboratory rabbits</atitle><jtitle>Archives of virology</jtitle><stitle>Arch Virol</stitle><addtitle>Arch Virol</addtitle><date>2020-12-01</date><risdate>2020</risdate><volume>165</volume><issue>12</issue><spage>2847</spage><epage>2856</epage><pages>2847-2856</pages><issn>0304-8608</issn><eissn>1432-8798</eissn><abstract>Here, we investigated the fecal, oral, blood, and skin virome of 10 laboratory rabbits using a viral metagenomic method. In the oral samples, we detected a novel polyomavirus (RabPyV), and phylogenetic analysis based on the large T antigen, VP1 and VP2 regions indicated that the novel strain might have undergone a recombination event. Recombination analysis based on related genomes confirmed that RabPyV is a multiple recombinant between rodent-like and avian-like polyomaviruses. In fecal samples, three partial or complete genome sequences of viruses belonging to the families
Picobirnaviridae
,
Parvoviridae
,
Microviridae
and
Coronaviridae
were characterized, and phylogenetic trees were constructed based on the predicted amino acid sequences of viral proteins. This study increases the amount of genetic information on viruses present in laboratory rabbits.</abstract><cop>Vienna</cop><pub>Springer Vienna</pub><pmid>33034764</pmid><doi>10.1007/s00705-020-04808-y</doi><tpages>10</tpages><orcidid>https://orcid.org/0000-0002-9352-6153</orcidid><oa>free_for_read</oa></addata></record> |
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| ispartof | Archives of virology, 2020-12, Vol.165 (12), p.2847-2856 |
| issn | 0304-8608 1432-8798 |
| language | eng |
| recordid | cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_7546134 |
| source | Springer Nature |
| subjects | Animals Animals, Laboratory - virology Antigen T (large) Biomedical and Life Sciences Biomedicine Blood - virology Feces Feces - virology Genome, Viral Genomes Infectious Diseases Laboratories Medical Microbiology Metagenome Metagenomics Mouth - virology Original Original Article Phylogenetics Phylogeny Polyomavirus - isolation & purification Rabbits - virology Recombination Skin - virology Viral Proteins - genetics Virology Viruses - classification Viruses - isolation & purification VP1 protein Whole Genome Sequencing |
| title | Fecal, oral, blood and skin virome of laboratory rabbits |
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