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Lupinus albus γ-Conglutin, a Protein Structurally Related to GH12 Xyloglucan-Specific Endo-Glucanase Inhibitor Proteins (XEGIPs), Shows Inhibitory Activity against GH2 β-Mannosidase
γ-conglutin (γC) is a major protein of seeds, but its function is still unknown. It shares high structural similarity with xyloglucan-specific endo-glucanase inhibitor proteins (XEGIPs) and, to a lesser extent, with endoxylanase inhibitors (TAXI-I), active against fungal glycoside hydrolases GH12 an...
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Published in: | International journal of molecular sciences 2020-10, Vol.21 (19), p.7305 |
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description | γ-conglutin (γC) is a major protein of
seeds, but its function is still unknown. It shares high structural similarity with xyloglucan-specific endo-glucanase inhibitor proteins (XEGIPs) and, to a lesser extent, with
endoxylanase inhibitors (TAXI-I), active against fungal glycoside hydrolases GH12 and GH11, respectively. However, γC lacks both these inhibitory activities. Since β-galactomannans are major components of the cell walls of endosperm in several legume plants, we tested the inhibitory activity of γC against a GH2 β-mannosidase (EC 3.2.1.25). γC was actually able to inhibit the enzyme, and this effect was enhanced by the presence of zinc ions. The stoichiometry of the γC/enzyme interaction was 1:1, and the calculated
was 1.55 μM. To obtain further insights into the interaction between γC and β-mannosidase, an in silico structural bioinformatic approach was followed, including some docking analyses. By and large, this work describes experimental findings that highlight new scenarios for understanding the natural role of γC. Although structural predictions can leave space for speculative interpretations, the full complexity of the data reported in this work allows one to hypothesize mechanisms of action for the basis of inhibition. At least two mechanisms seem plausible, both involving lupin-γC-peculiar structures. |
doi_str_mv | 10.3390/ijms21197305 |
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seeds, but its function is still unknown. It shares high structural similarity with xyloglucan-specific endo-glucanase inhibitor proteins (XEGIPs) and, to a lesser extent, with
endoxylanase inhibitors (TAXI-I), active against fungal glycoside hydrolases GH12 and GH11, respectively. However, γC lacks both these inhibitory activities. Since β-galactomannans are major components of the cell walls of endosperm in several legume plants, we tested the inhibitory activity of γC against a GH2 β-mannosidase (EC 3.2.1.25). γC was actually able to inhibit the enzyme, and this effect was enhanced by the presence of zinc ions. The stoichiometry of the γC/enzyme interaction was 1:1, and the calculated
was 1.55 μM. To obtain further insights into the interaction between γC and β-mannosidase, an in silico structural bioinformatic approach was followed, including some docking analyses. By and large, this work describes experimental findings that highlight new scenarios for understanding the natural role of γC. Although structural predictions can leave space for speculative interpretations, the full complexity of the data reported in this work allows one to hypothesize mechanisms of action for the basis of inhibition. At least two mechanisms seem plausible, both involving lupin-γC-peculiar structures.</description><identifier>ISSN: 1422-0067</identifier><identifier>ISSN: 1661-6596</identifier><identifier>EISSN: 1422-0067</identifier><identifier>DOI: 10.3390/ijms21197305</identifier><identifier>PMID: 33022933</identifier><language>eng</language><publisher>Switzerland: MDPI AG</publisher><subject>Amino Acid Sequence - genetics ; Amino acids ; Cell walls ; Endosperm ; Enzymes ; Glucans - chemistry ; Glucans - genetics ; Glycosidases ; Glycoside hydrolase ; Glycoside Hydrolases - antagonists & inhibitors ; Glycoside Hydrolases - genetics ; Inhibitors ; Legumes ; Lupinus - chemistry ; Lupinus albus ; Mannosidase ; Microorganisms ; Plant Proteins - genetics ; Plant Proteins - ultrastructure ; Proteins ; Seed Storage Proteins - genetics ; Seed Storage Proteins - ultrastructure ; Seeds ; Seeds - chemistry ; Seeds - growth & development ; Stoichiometry ; Triticum - chemistry ; Xylans - chemistry ; Xylans - genetics ; Xyloglucan</subject><ispartof>International journal of molecular sciences, 2020-10, Vol.21 (19), p.7305</ispartof><rights>2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2020 by the authors. 2020</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c412t-2a73d9b11f2ce568661fc93ab2cd22c4db92f5bf7c66548d1b9b76569b6ec7ab3</citedby><cites>FETCH-LOGICAL-c412t-2a73d9b11f2ce568661fc93ab2cd22c4db92f5bf7c66548d1b9b76569b6ec7ab3</cites><orcidid>0000-0002-9641-2223 ; 0000-0002-9114-3212 ; 0000-0002-7787-9645 ; 0000-0003-1970-0122</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.proquest.com/docview/2548692426/fulltextPDF?pq-origsite=primo$$EPDF$$P50$$Gproquest$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/2548692426?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,881,25731,27901,27902,36989,36990,44566,53766,53768,74869</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33022933$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Benedetti, Stefano De</creatorcontrib><creatorcontrib>Galanti, Elisabetta</creatorcontrib><creatorcontrib>Capraro, Jessica</creatorcontrib><creatorcontrib>Magni, Chiara</creatorcontrib><creatorcontrib>Scarafoni, Alessio</creatorcontrib><title>Lupinus albus γ-Conglutin, a Protein Structurally Related to GH12 Xyloglucan-Specific Endo-Glucanase Inhibitor Proteins (XEGIPs), Shows Inhibitory Activity against GH2 β-Mannosidase</title><title>International journal of molecular sciences</title><addtitle>Int J Mol Sci</addtitle><description>γ-conglutin (γC) is a major protein of
seeds, but its function is still unknown. It shares high structural similarity with xyloglucan-specific endo-glucanase inhibitor proteins (XEGIPs) and, to a lesser extent, with
endoxylanase inhibitors (TAXI-I), active against fungal glycoside hydrolases GH12 and GH11, respectively. However, γC lacks both these inhibitory activities. Since β-galactomannans are major components of the cell walls of endosperm in several legume plants, we tested the inhibitory activity of γC against a GH2 β-mannosidase (EC 3.2.1.25). γC was actually able to inhibit the enzyme, and this effect was enhanced by the presence of zinc ions. The stoichiometry of the γC/enzyme interaction was 1:1, and the calculated
was 1.55 μM. To obtain further insights into the interaction between γC and β-mannosidase, an in silico structural bioinformatic approach was followed, including some docking analyses. By and large, this work describes experimental findings that highlight new scenarios for understanding the natural role of γC. Although structural predictions can leave space for speculative interpretations, the full complexity of the data reported in this work allows one to hypothesize mechanisms of action for the basis of inhibition. At least two mechanisms seem plausible, both involving lupin-γC-peculiar structures.</description><subject>Amino Acid Sequence - genetics</subject><subject>Amino acids</subject><subject>Cell walls</subject><subject>Endosperm</subject><subject>Enzymes</subject><subject>Glucans - chemistry</subject><subject>Glucans - genetics</subject><subject>Glycosidases</subject><subject>Glycoside hydrolase</subject><subject>Glycoside Hydrolases - antagonists & inhibitors</subject><subject>Glycoside Hydrolases - genetics</subject><subject>Inhibitors</subject><subject>Legumes</subject><subject>Lupinus - chemistry</subject><subject>Lupinus albus</subject><subject>Mannosidase</subject><subject>Microorganisms</subject><subject>Plant Proteins - genetics</subject><subject>Plant Proteins - ultrastructure</subject><subject>Proteins</subject><subject>Seed Storage Proteins - genetics</subject><subject>Seed Storage Proteins - ultrastructure</subject><subject>Seeds</subject><subject>Seeds - chemistry</subject><subject>Seeds - growth & development</subject><subject>Stoichiometry</subject><subject>Triticum - chemistry</subject><subject>Xylans - chemistry</subject><subject>Xylans - genetics</subject><subject>Xyloglucan</subject><issn>1422-0067</issn><issn>1661-6596</issn><issn>1422-0067</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>PIMPY</sourceid><recordid>eNpdkk-PEyEYhydG466rN8-GxMuadBReZphyMdk0tdukxo3VZG8EGKalmUIXmDX9WnrwW-xnEt0_Vi9A4OHhfcmvKF4S_JZSjt_ZzTYCIbyhuH5UHJMKoMSYNY8P1kfFsxg3GAOFmj8tjijFAJzS4-LnYthZN0Qke5XHmx_lxLtVPyTrRkiii-CTsQ4tUxh0GoLs-z36bHqZTIuSR7NzAuhy3_t8RUtXLndG285qNHWtL2d_NmU0aO7WVtnkw70xotPL6Wx-Ed-M0HLtv8W_yB6d6WSvbdojuZIZTfkZQDffy4_SOR9tm43Piyed7KN5cTefFF8_TL9MzsvFp9l8crYodUUglSAb2nJFSAfa1GzMGOk0p1KBbgF01SoOXa26RjNWV-OWKK4aVjOumNGNVPSkeH_r3Q1qa1ptXMqfIHbBbmXYCy-t-PfE2bVY-WvR1GOK8TgLTu8EwV8NJiaxtVGbvpfO-CEKqCpOmoZxyOjr_9CNH4LL7QnIxWWkApap0S2lg48xmO6hGILF70SIw0Rk_NVhAw_wfQToL_YZtl8</recordid><startdate>20201003</startdate><enddate>20201003</enddate><creator>Benedetti, Stefano De</creator><creator>Galanti, Elisabetta</creator><creator>Capraro, Jessica</creator><creator>Magni, Chiara</creator><creator>Scarafoni, Alessio</creator><general>MDPI AG</general><general>MDPI</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>K9.</scope><scope>M0S</scope><scope>M1P</scope><scope>M2O</scope><scope>MBDVC</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0002-9641-2223</orcidid><orcidid>https://orcid.org/0000-0002-9114-3212</orcidid><orcidid>https://orcid.org/0000-0002-7787-9645</orcidid><orcidid>https://orcid.org/0000-0003-1970-0122</orcidid></search><sort><creationdate>20201003</creationdate><title>Lupinus albus γ-Conglutin, a Protein Structurally Related to GH12 Xyloglucan-Specific Endo-Glucanase Inhibitor Proteins (XEGIPs), Shows Inhibitory Activity against GH2 β-Mannosidase</title><author>Benedetti, Stefano De ; 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seeds, but its function is still unknown. It shares high structural similarity with xyloglucan-specific endo-glucanase inhibitor proteins (XEGIPs) and, to a lesser extent, with
endoxylanase inhibitors (TAXI-I), active against fungal glycoside hydrolases GH12 and GH11, respectively. However, γC lacks both these inhibitory activities. Since β-galactomannans are major components of the cell walls of endosperm in several legume plants, we tested the inhibitory activity of γC against a GH2 β-mannosidase (EC 3.2.1.25). γC was actually able to inhibit the enzyme, and this effect was enhanced by the presence of zinc ions. The stoichiometry of the γC/enzyme interaction was 1:1, and the calculated
was 1.55 μM. To obtain further insights into the interaction between γC and β-mannosidase, an in silico structural bioinformatic approach was followed, including some docking analyses. By and large, this work describes experimental findings that highlight new scenarios for understanding the natural role of γC. Although structural predictions can leave space for speculative interpretations, the full complexity of the data reported in this work allows one to hypothesize mechanisms of action for the basis of inhibition. At least two mechanisms seem plausible, both involving lupin-γC-peculiar structures.</abstract><cop>Switzerland</cop><pub>MDPI AG</pub><pmid>33022933</pmid><doi>10.3390/ijms21197305</doi><orcidid>https://orcid.org/0000-0002-9641-2223</orcidid><orcidid>https://orcid.org/0000-0002-9114-3212</orcidid><orcidid>https://orcid.org/0000-0002-7787-9645</orcidid><orcidid>https://orcid.org/0000-0003-1970-0122</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Amino Acid Sequence - genetics Amino acids Cell walls Endosperm Enzymes Glucans - chemistry Glucans - genetics Glycosidases Glycoside hydrolase Glycoside Hydrolases - antagonists & inhibitors Glycoside Hydrolases - genetics Inhibitors Legumes Lupinus - chemistry Lupinus albus Mannosidase Microorganisms Plant Proteins - genetics Plant Proteins - ultrastructure Proteins Seed Storage Proteins - genetics Seed Storage Proteins - ultrastructure Seeds Seeds - chemistry Seeds - growth & development Stoichiometry Triticum - chemistry Xylans - chemistry Xylans - genetics Xyloglucan |
title | Lupinus albus γ-Conglutin, a Protein Structurally Related to GH12 Xyloglucan-Specific Endo-Glucanase Inhibitor Proteins (XEGIPs), Shows Inhibitory Activity against GH2 β-Mannosidase |
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