Loading…
Predicting Chemotherapeutic Response for Far-advanced Gastric Cancer by Radiomics with Deep Learning Semi-automatic Segmentation
Purpose: To build a dual-energy computed tomography (DECT) delta radiomics model to predict chemotherapeutic response for far-advanced gastric cancer (GC) patients. A semi-automatic segmentation method based on deep learning was designed, and its performance was compared with that of manual segmenta...
Saved in:
Published in: | Journal of Cancer 2020-01, Vol.11 (24), p.7224-7236 |
---|---|
Main Authors: | , , , , , , , , , , |
Format: | Article |
Language: | English |
Subjects: | |
Citations: | Items that cite this one |
Online Access: | Get full text |
Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
cited_by | cdi_FETCH-LOGICAL-c380t-14d8eb48582ecedcc681c738e2e110ff89cae78ef650c5809d91ab37371954d63 |
---|---|
cites | |
container_end_page | 7236 |
container_issue | 24 |
container_start_page | 7224 |
container_title | Journal of Cancer |
container_volume | 11 |
creator | Tan, Jing-wen Wang, Lan Chen, Yong Xi, WenQi Ji, Jun Wang, Lingyun Xu, Xin Zou, Long-kuan Feng, Jian-xing Zhang, Jun Zhang, Huan |
description | Purpose: To build a dual-energy computed tomography (DECT) delta radiomics model to predict chemotherapeutic response for far-advanced gastric cancer (GC) patients. A semi-automatic segmentation method based on deep learning was designed, and its performance was compared with that of manual segmentation. Methods: This retrospective study included 86 patients with far-advanced GC treated with chemotherapy from September 2016 to December 2017 (66 and 20 in the training and testing cohorts, respectively). Delta radiomics features between the baseline and first follow-up DECT were modeled by random forest to predict the chemotherapeutic response evaluated by the second follow-up DECT. Nine feature subsets from confounding factors and delta radiomics features were used to choose the best model with 10-fold cross-validation in the training cohort. A semi-automatic segmentation method based on deep learning was developed to predict the chemotherapeutic response and compared with manual segmentation in the testing cohort, which was further validated in an independent validation cohort of 30 patients. Results: The best model, constructed by confounding factors and texture features, reached an average AUC of 0.752 in the training cohort. Our proposed semi-automatic segmentation method was more time-effective than manual segmentation, with average saving-time of 11.2333 ± 6.3989 minutes and 9.9889 ±5.5086 minutes in the testing cohort and the independent validation cohort, respectively (both p < 0.05). The predictive ability of the semi-automatic segmentation was also better than that of the manual segmentation both in the testing cohort and the independent validation cohort (AUC: 0.728 vs. 0.687 and 0.828 vs. 0.749, respectively). Conclusion: DECT delta radiomics serves as a promising biomarker for predicting chemotherapeutic response for far-advanced GC. Semi-automatic segmentation based on deep learning shows the potential for clinical use with increased reproducibility and decreased labor costs compared to the manual version. |
doi_str_mv | 10.7150/jca.46704 |
format | article |
fullrecord | <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_7646171</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2461002703</sourcerecordid><originalsourceid>FETCH-LOGICAL-c380t-14d8eb48582ecedcc681c738e2e110ff89cae78ef650c5809d91ab37371954d63</originalsourceid><addsrcrecordid>eNpdkUFLHDEUx4NYqlgP_QYBL3oYm0xmksylUNZqCwstWs_hbebNbpadZEwyFm_96M2qlLa55IX345f3-BPynrNLxVv2YWvhspGKNQfkmGuhqk7K5vCv-oicprRl5YiuVo14S46E4J3QWh6TX98j9s5m59d0scEx5A1GmHDOztJbTFPwCekQIr2GWEH_CN5iT28g5ViIxf4Z6eqJ3kLvwuhsoj9d3tArxIkuEaLfm-9wdBXMOYyw997hekSfSx38O_JmgF3C09f7hNxff_6x-FItv918XXxaVlZolive9BpXjW51jWUAa6XmVgmNNXLOhkF3FlBpHGTLbKtZ13ccVkIJxbu26aU4IR9fvNO8Goug_B9hZ6boRohPJoAz_3a825h1eDRKNpIrXgTnr4IYHmZM2YwuWdztwGOYk6kLxlitmCjo2X_oNszRl_VM3XZa1JprVaiLF8rGkFLE4c8wnJl9tKZEa56jFb8BNfKXQQ</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2598328187</pqid></control><display><type>article</type><title>Predicting Chemotherapeutic Response for Far-advanced Gastric Cancer by Radiomics with Deep Learning Semi-automatic Segmentation</title><source>Publicly Available Content Database</source><source>PubMed Central</source><creator>Tan, Jing-wen ; Wang, Lan ; Chen, Yong ; Xi, WenQi ; Ji, Jun ; Wang, Lingyun ; Xu, Xin ; Zou, Long-kuan ; Feng, Jian-xing ; Zhang, Jun ; Zhang, Huan</creator><creatorcontrib>Tan, Jing-wen ; Wang, Lan ; Chen, Yong ; Xi, WenQi ; Ji, Jun ; Wang, Lingyun ; Xu, Xin ; Zou, Long-kuan ; Feng, Jian-xing ; Zhang, Jun ; Zhang, Huan</creatorcontrib><description>Purpose: To build a dual-energy computed tomography (DECT) delta radiomics model to predict chemotherapeutic response for far-advanced gastric cancer (GC) patients. A semi-automatic segmentation method based on deep learning was designed, and its performance was compared with that of manual segmentation. Methods: This retrospective study included 86 patients with far-advanced GC treated with chemotherapy from September 2016 to December 2017 (66 and 20 in the training and testing cohorts, respectively). Delta radiomics features between the baseline and first follow-up DECT were modeled by random forest to predict the chemotherapeutic response evaluated by the second follow-up DECT. Nine feature subsets from confounding factors and delta radiomics features were used to choose the best model with 10-fold cross-validation in the training cohort. A semi-automatic segmentation method based on deep learning was developed to predict the chemotherapeutic response and compared with manual segmentation in the testing cohort, which was further validated in an independent validation cohort of 30 patients. Results: The best model, constructed by confounding factors and texture features, reached an average AUC of 0.752 in the training cohort. Our proposed semi-automatic segmentation method was more time-effective than manual segmentation, with average saving-time of 11.2333 ± 6.3989 minutes and 9.9889 ±5.5086 minutes in the testing cohort and the independent validation cohort, respectively (both p < 0.05). The predictive ability of the semi-automatic segmentation was also better than that of the manual segmentation both in the testing cohort and the independent validation cohort (AUC: 0.728 vs. 0.687 and 0.828 vs. 0.749, respectively). Conclusion: DECT delta radiomics serves as a promising biomarker for predicting chemotherapeutic response for far-advanced GC. Semi-automatic segmentation based on deep learning shows the potential for clinical use with increased reproducibility and decreased labor costs compared to the manual version.</description><identifier>ISSN: 1837-9664</identifier><identifier>EISSN: 1837-9664</identifier><identifier>DOI: 10.7150/jca.46704</identifier><identifier>PMID: 33193886</identifier><language>eng</language><publisher>Wyoming: Ivyspring International Publisher Pty Ltd</publisher><subject>Abdomen ; Chemotherapy ; Deep learning ; Gastric cancer ; Medical prognosis ; Metastasis ; Morphology ; Research Paper ; Tumors</subject><ispartof>Journal of Cancer, 2020-01, Vol.11 (24), p.7224-7236</ispartof><rights>2020. This work is published under https://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>The author(s) 2020</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c380t-14d8eb48582ecedcc681c738e2e110ff89cae78ef650c5809d91ab37371954d63</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.proquest.com/docview/2598328187/fulltextPDF?pq-origsite=primo$$EPDF$$P50$$Gproquest$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/2598328187?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,25753,27924,27925,37012,37013,44590,53791,53793,75126</link.rule.ids></links><search><creatorcontrib>Tan, Jing-wen</creatorcontrib><creatorcontrib>Wang, Lan</creatorcontrib><creatorcontrib>Chen, Yong</creatorcontrib><creatorcontrib>Xi, WenQi</creatorcontrib><creatorcontrib>Ji, Jun</creatorcontrib><creatorcontrib>Wang, Lingyun</creatorcontrib><creatorcontrib>Xu, Xin</creatorcontrib><creatorcontrib>Zou, Long-kuan</creatorcontrib><creatorcontrib>Feng, Jian-xing</creatorcontrib><creatorcontrib>Zhang, Jun</creatorcontrib><creatorcontrib>Zhang, Huan</creatorcontrib><title>Predicting Chemotherapeutic Response for Far-advanced Gastric Cancer by Radiomics with Deep Learning Semi-automatic Segmentation</title><title>Journal of Cancer</title><description>Purpose: To build a dual-energy computed tomography (DECT) delta radiomics model to predict chemotherapeutic response for far-advanced gastric cancer (GC) patients. A semi-automatic segmentation method based on deep learning was designed, and its performance was compared with that of manual segmentation. Methods: This retrospective study included 86 patients with far-advanced GC treated with chemotherapy from September 2016 to December 2017 (66 and 20 in the training and testing cohorts, respectively). Delta radiomics features between the baseline and first follow-up DECT were modeled by random forest to predict the chemotherapeutic response evaluated by the second follow-up DECT. Nine feature subsets from confounding factors and delta radiomics features were used to choose the best model with 10-fold cross-validation in the training cohort. A semi-automatic segmentation method based on deep learning was developed to predict the chemotherapeutic response and compared with manual segmentation in the testing cohort, which was further validated in an independent validation cohort of 30 patients. Results: The best model, constructed by confounding factors and texture features, reached an average AUC of 0.752 in the training cohort. Our proposed semi-automatic segmentation method was more time-effective than manual segmentation, with average saving-time of 11.2333 ± 6.3989 minutes and 9.9889 ±5.5086 minutes in the testing cohort and the independent validation cohort, respectively (both p < 0.05). The predictive ability of the semi-automatic segmentation was also better than that of the manual segmentation both in the testing cohort and the independent validation cohort (AUC: 0.728 vs. 0.687 and 0.828 vs. 0.749, respectively). Conclusion: DECT delta radiomics serves as a promising biomarker for predicting chemotherapeutic response for far-advanced GC. Semi-automatic segmentation based on deep learning shows the potential for clinical use with increased reproducibility and decreased labor costs compared to the manual version.</description><subject>Abdomen</subject><subject>Chemotherapy</subject><subject>Deep learning</subject><subject>Gastric cancer</subject><subject>Medical prognosis</subject><subject>Metastasis</subject><subject>Morphology</subject><subject>Research Paper</subject><subject>Tumors</subject><issn>1837-9664</issn><issn>1837-9664</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>PIMPY</sourceid><recordid>eNpdkUFLHDEUx4NYqlgP_QYBL3oYm0xmksylUNZqCwstWs_hbebNbpadZEwyFm_96M2qlLa55IX345f3-BPynrNLxVv2YWvhspGKNQfkmGuhqk7K5vCv-oicprRl5YiuVo14S46E4J3QWh6TX98j9s5m59d0scEx5A1GmHDOztJbTFPwCekQIr2GWEH_CN5iT28g5ViIxf4Z6eqJ3kLvwuhsoj9d3tArxIkuEaLfm-9wdBXMOYyw997hekSfSx38O_JmgF3C09f7hNxff_6x-FItv918XXxaVlZolive9BpXjW51jWUAa6XmVgmNNXLOhkF3FlBpHGTLbKtZ13ccVkIJxbu26aU4IR9fvNO8Goug_B9hZ6boRohPJoAz_3a825h1eDRKNpIrXgTnr4IYHmZM2YwuWdztwGOYk6kLxlitmCjo2X_oNszRl_VM3XZa1JprVaiLF8rGkFLE4c8wnJl9tKZEa56jFb8BNfKXQQ</recordid><startdate>20200101</startdate><enddate>20200101</enddate><creator>Tan, Jing-wen</creator><creator>Wang, Lan</creator><creator>Chen, Yong</creator><creator>Xi, WenQi</creator><creator>Ji, Jun</creator><creator>Wang, Lingyun</creator><creator>Xu, Xin</creator><creator>Zou, Long-kuan</creator><creator>Feng, Jian-xing</creator><creator>Zhang, Jun</creator><creator>Zhang, Huan</creator><general>Ivyspring International Publisher Pty Ltd</general><general>Ivyspring International Publisher</general><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>K9.</scope><scope>M0S</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20200101</creationdate><title>Predicting Chemotherapeutic Response for Far-advanced Gastric Cancer by Radiomics with Deep Learning Semi-automatic Segmentation</title><author>Tan, Jing-wen ; Wang, Lan ; Chen, Yong ; Xi, WenQi ; Ji, Jun ; Wang, Lingyun ; Xu, Xin ; Zou, Long-kuan ; Feng, Jian-xing ; Zhang, Jun ; Zhang, Huan</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c380t-14d8eb48582ecedcc681c738e2e110ff89cae78ef650c5809d91ab37371954d63</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Abdomen</topic><topic>Chemotherapy</topic><topic>Deep learning</topic><topic>Gastric cancer</topic><topic>Medical prognosis</topic><topic>Metastasis</topic><topic>Morphology</topic><topic>Research Paper</topic><topic>Tumors</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Tan, Jing-wen</creatorcontrib><creatorcontrib>Wang, Lan</creatorcontrib><creatorcontrib>Chen, Yong</creatorcontrib><creatorcontrib>Xi, WenQi</creatorcontrib><creatorcontrib>Ji, Jun</creatorcontrib><creatorcontrib>Wang, Lingyun</creatorcontrib><creatorcontrib>Xu, Xin</creatorcontrib><creatorcontrib>Zou, Long-kuan</creatorcontrib><creatorcontrib>Feng, Jian-xing</creatorcontrib><creatorcontrib>Zhang, Jun</creatorcontrib><creatorcontrib>Zhang, Huan</creatorcontrib><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest Central</collection><collection>ProQuest Central Essentials</collection><collection>AUTh Library subscriptions: ProQuest Central</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Journal of Cancer</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Tan, Jing-wen</au><au>Wang, Lan</au><au>Chen, Yong</au><au>Xi, WenQi</au><au>Ji, Jun</au><au>Wang, Lingyun</au><au>Xu, Xin</au><au>Zou, Long-kuan</au><au>Feng, Jian-xing</au><au>Zhang, Jun</au><au>Zhang, Huan</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Predicting Chemotherapeutic Response for Far-advanced Gastric Cancer by Radiomics with Deep Learning Semi-automatic Segmentation</atitle><jtitle>Journal of Cancer</jtitle><date>2020-01-01</date><risdate>2020</risdate><volume>11</volume><issue>24</issue><spage>7224</spage><epage>7236</epage><pages>7224-7236</pages><issn>1837-9664</issn><eissn>1837-9664</eissn><abstract>Purpose: To build a dual-energy computed tomography (DECT) delta radiomics model to predict chemotherapeutic response for far-advanced gastric cancer (GC) patients. A semi-automatic segmentation method based on deep learning was designed, and its performance was compared with that of manual segmentation. Methods: This retrospective study included 86 patients with far-advanced GC treated with chemotherapy from September 2016 to December 2017 (66 and 20 in the training and testing cohorts, respectively). Delta radiomics features between the baseline and first follow-up DECT were modeled by random forest to predict the chemotherapeutic response evaluated by the second follow-up DECT. Nine feature subsets from confounding factors and delta radiomics features were used to choose the best model with 10-fold cross-validation in the training cohort. A semi-automatic segmentation method based on deep learning was developed to predict the chemotherapeutic response and compared with manual segmentation in the testing cohort, which was further validated in an independent validation cohort of 30 patients. Results: The best model, constructed by confounding factors and texture features, reached an average AUC of 0.752 in the training cohort. Our proposed semi-automatic segmentation method was more time-effective than manual segmentation, with average saving-time of 11.2333 ± 6.3989 minutes and 9.9889 ±5.5086 minutes in the testing cohort and the independent validation cohort, respectively (both p < 0.05). The predictive ability of the semi-automatic segmentation was also better than that of the manual segmentation both in the testing cohort and the independent validation cohort (AUC: 0.728 vs. 0.687 and 0.828 vs. 0.749, respectively). Conclusion: DECT delta radiomics serves as a promising biomarker for predicting chemotherapeutic response for far-advanced GC. Semi-automatic segmentation based on deep learning shows the potential for clinical use with increased reproducibility and decreased labor costs compared to the manual version.</abstract><cop>Wyoming</cop><pub>Ivyspring International Publisher Pty Ltd</pub><pmid>33193886</pmid><doi>10.7150/jca.46704</doi><tpages>13</tpages><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
identifier | ISSN: 1837-9664 |
ispartof | Journal of Cancer, 2020-01, Vol.11 (24), p.7224-7236 |
issn | 1837-9664 1837-9664 |
language | eng |
recordid | cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_7646171 |
source | Publicly Available Content Database; PubMed Central |
subjects | Abdomen Chemotherapy Deep learning Gastric cancer Medical prognosis Metastasis Morphology Research Paper Tumors |
title | Predicting Chemotherapeutic Response for Far-advanced Gastric Cancer by Radiomics with Deep Learning Semi-automatic Segmentation |
url | http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-29T16%3A53%3A53IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Predicting%20Chemotherapeutic%20Response%20for%20Far-advanced%20Gastric%20Cancer%20by%20Radiomics%20with%20Deep%20Learning%20Semi-automatic%20Segmentation&rft.jtitle=Journal%20of%20Cancer&rft.au=Tan,%20Jing-wen&rft.date=2020-01-01&rft.volume=11&rft.issue=24&rft.spage=7224&rft.epage=7236&rft.pages=7224-7236&rft.issn=1837-9664&rft.eissn=1837-9664&rft_id=info:doi/10.7150/jca.46704&rft_dat=%3Cproquest_pubme%3E2461002703%3C/proquest_pubme%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c380t-14d8eb48582ecedcc681c738e2e110ff89cae78ef650c5809d91ab37371954d63%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_pqid=2598328187&rft_id=info:pmid/33193886&rfr_iscdi=true |