Loading…

Predicting Chemotherapeutic Response for Far-advanced Gastric Cancer by Radiomics with Deep Learning Semi-automatic Segmentation

Purpose: To build a dual-energy computed tomography (DECT) delta radiomics model to predict chemotherapeutic response for far-advanced gastric cancer (GC) patients. A semi-automatic segmentation method based on deep learning was designed, and its performance was compared with that of manual segmenta...

Full description

Saved in:
Bibliographic Details
Published in:Journal of Cancer 2020-01, Vol.11 (24), p.7224-7236
Main Authors: Tan, Jing-wen, Wang, Lan, Chen, Yong, Xi, WenQi, Ji, Jun, Wang, Lingyun, Xu, Xin, Zou, Long-kuan, Feng, Jian-xing, Zhang, Jun, Zhang, Huan
Format: Article
Language:English
Subjects:
Citations: Items that cite this one
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
cited_by cdi_FETCH-LOGICAL-c380t-14d8eb48582ecedcc681c738e2e110ff89cae78ef650c5809d91ab37371954d63
cites
container_end_page 7236
container_issue 24
container_start_page 7224
container_title Journal of Cancer
container_volume 11
creator Tan, Jing-wen
Wang, Lan
Chen, Yong
Xi, WenQi
Ji, Jun
Wang, Lingyun
Xu, Xin
Zou, Long-kuan
Feng, Jian-xing
Zhang, Jun
Zhang, Huan
description Purpose: To build a dual-energy computed tomography (DECT) delta radiomics model to predict chemotherapeutic response for far-advanced gastric cancer (GC) patients. A semi-automatic segmentation method based on deep learning was designed, and its performance was compared with that of manual segmentation. Methods: This retrospective study included 86 patients with far-advanced GC treated with chemotherapy from September 2016 to December 2017 (66 and 20 in the training and testing cohorts, respectively). Delta radiomics features between the baseline and first follow-up DECT were modeled by random forest to predict the chemotherapeutic response evaluated by the second follow-up DECT. Nine feature subsets from confounding factors and delta radiomics features were used to choose the best model with 10-fold cross-validation in the training cohort. A semi-automatic segmentation method based on deep learning was developed to predict the chemotherapeutic response and compared with manual segmentation in the testing cohort, which was further validated in an independent validation cohort of 30 patients. Results: The best model, constructed by confounding factors and texture features, reached an average AUC of 0.752 in the training cohort. Our proposed semi-automatic segmentation method was more time-effective than manual segmentation, with average saving-time of 11.2333 ± 6.3989 minutes and 9.9889 ±5.5086 minutes in the testing cohort and the independent validation cohort, respectively (both p < 0.05). The predictive ability of the semi-automatic segmentation was also better than that of the manual segmentation both in the testing cohort and the independent validation cohort (AUC: 0.728 vs. 0.687 and 0.828 vs. 0.749, respectively). Conclusion: DECT delta radiomics serves as a promising biomarker for predicting chemotherapeutic response for far-advanced GC. Semi-automatic segmentation based on deep learning shows the potential for clinical use with increased reproducibility and decreased labor costs compared to the manual version.
doi_str_mv 10.7150/jca.46704
format article
fullrecord <record><control><sourceid>proquest_pubme</sourceid><recordid>TN_cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_7646171</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2461002703</sourcerecordid><originalsourceid>FETCH-LOGICAL-c380t-14d8eb48582ecedcc681c738e2e110ff89cae78ef650c5809d91ab37371954d63</originalsourceid><addsrcrecordid>eNpdkUFLHDEUx4NYqlgP_QYBL3oYm0xmksylUNZqCwstWs_hbebNbpadZEwyFm_96M2qlLa55IX345f3-BPynrNLxVv2YWvhspGKNQfkmGuhqk7K5vCv-oicprRl5YiuVo14S46E4J3QWh6TX98j9s5m59d0scEx5A1GmHDOztJbTFPwCekQIr2GWEH_CN5iT28g5ViIxf4Z6eqJ3kLvwuhsoj9d3tArxIkuEaLfm-9wdBXMOYyw997hekSfSx38O_JmgF3C09f7hNxff_6x-FItv918XXxaVlZolive9BpXjW51jWUAa6XmVgmNNXLOhkF3FlBpHGTLbKtZ13ccVkIJxbu26aU4IR9fvNO8Goug_B9hZ6boRohPJoAz_3a825h1eDRKNpIrXgTnr4IYHmZM2YwuWdztwGOYk6kLxlitmCjo2X_oNszRl_VM3XZa1JprVaiLF8rGkFLE4c8wnJl9tKZEa56jFb8BNfKXQQ</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2598328187</pqid></control><display><type>article</type><title>Predicting Chemotherapeutic Response for Far-advanced Gastric Cancer by Radiomics with Deep Learning Semi-automatic Segmentation</title><source>Publicly Available Content Database</source><source>PubMed Central</source><creator>Tan, Jing-wen ; Wang, Lan ; Chen, Yong ; Xi, WenQi ; Ji, Jun ; Wang, Lingyun ; Xu, Xin ; Zou, Long-kuan ; Feng, Jian-xing ; Zhang, Jun ; Zhang, Huan</creator><creatorcontrib>Tan, Jing-wen ; Wang, Lan ; Chen, Yong ; Xi, WenQi ; Ji, Jun ; Wang, Lingyun ; Xu, Xin ; Zou, Long-kuan ; Feng, Jian-xing ; Zhang, Jun ; Zhang, Huan</creatorcontrib><description>Purpose: To build a dual-energy computed tomography (DECT) delta radiomics model to predict chemotherapeutic response for far-advanced gastric cancer (GC) patients. A semi-automatic segmentation method based on deep learning was designed, and its performance was compared with that of manual segmentation. Methods: This retrospective study included 86 patients with far-advanced GC treated with chemotherapy from September 2016 to December 2017 (66 and 20 in the training and testing cohorts, respectively). Delta radiomics features between the baseline and first follow-up DECT were modeled by random forest to predict the chemotherapeutic response evaluated by the second follow-up DECT. Nine feature subsets from confounding factors and delta radiomics features were used to choose the best model with 10-fold cross-validation in the training cohort. A semi-automatic segmentation method based on deep learning was developed to predict the chemotherapeutic response and compared with manual segmentation in the testing cohort, which was further validated in an independent validation cohort of 30 patients. Results: The best model, constructed by confounding factors and texture features, reached an average AUC of 0.752 in the training cohort. Our proposed semi-automatic segmentation method was more time-effective than manual segmentation, with average saving-time of 11.2333 ± 6.3989 minutes and 9.9889 ±5.5086 minutes in the testing cohort and the independent validation cohort, respectively (both p &lt; 0.05). The predictive ability of the semi-automatic segmentation was also better than that of the manual segmentation both in the testing cohort and the independent validation cohort (AUC: 0.728 vs. 0.687 and 0.828 vs. 0.749, respectively). Conclusion: DECT delta radiomics serves as a promising biomarker for predicting chemotherapeutic response for far-advanced GC. Semi-automatic segmentation based on deep learning shows the potential for clinical use with increased reproducibility and decreased labor costs compared to the manual version.</description><identifier>ISSN: 1837-9664</identifier><identifier>EISSN: 1837-9664</identifier><identifier>DOI: 10.7150/jca.46704</identifier><identifier>PMID: 33193886</identifier><language>eng</language><publisher>Wyoming: Ivyspring International Publisher Pty Ltd</publisher><subject>Abdomen ; Chemotherapy ; Deep learning ; Gastric cancer ; Medical prognosis ; Metastasis ; Morphology ; Research Paper ; Tumors</subject><ispartof>Journal of Cancer, 2020-01, Vol.11 (24), p.7224-7236</ispartof><rights>2020. This work is published under https://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>The author(s) 2020</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c380t-14d8eb48582ecedcc681c738e2e110ff89cae78ef650c5809d91ab37371954d63</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.proquest.com/docview/2598328187/fulltextPDF?pq-origsite=primo$$EPDF$$P50$$Gproquest$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.proquest.com/docview/2598328187?pq-origsite=primo$$EHTML$$P50$$Gproquest$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,25753,27924,27925,37012,37013,44590,53791,53793,75126</link.rule.ids></links><search><creatorcontrib>Tan, Jing-wen</creatorcontrib><creatorcontrib>Wang, Lan</creatorcontrib><creatorcontrib>Chen, Yong</creatorcontrib><creatorcontrib>Xi, WenQi</creatorcontrib><creatorcontrib>Ji, Jun</creatorcontrib><creatorcontrib>Wang, Lingyun</creatorcontrib><creatorcontrib>Xu, Xin</creatorcontrib><creatorcontrib>Zou, Long-kuan</creatorcontrib><creatorcontrib>Feng, Jian-xing</creatorcontrib><creatorcontrib>Zhang, Jun</creatorcontrib><creatorcontrib>Zhang, Huan</creatorcontrib><title>Predicting Chemotherapeutic Response for Far-advanced Gastric Cancer by Radiomics with Deep Learning Semi-automatic Segmentation</title><title>Journal of Cancer</title><description>Purpose: To build a dual-energy computed tomography (DECT) delta radiomics model to predict chemotherapeutic response for far-advanced gastric cancer (GC) patients. A semi-automatic segmentation method based on deep learning was designed, and its performance was compared with that of manual segmentation. Methods: This retrospective study included 86 patients with far-advanced GC treated with chemotherapy from September 2016 to December 2017 (66 and 20 in the training and testing cohorts, respectively). Delta radiomics features between the baseline and first follow-up DECT were modeled by random forest to predict the chemotherapeutic response evaluated by the second follow-up DECT. Nine feature subsets from confounding factors and delta radiomics features were used to choose the best model with 10-fold cross-validation in the training cohort. A semi-automatic segmentation method based on deep learning was developed to predict the chemotherapeutic response and compared with manual segmentation in the testing cohort, which was further validated in an independent validation cohort of 30 patients. Results: The best model, constructed by confounding factors and texture features, reached an average AUC of 0.752 in the training cohort. Our proposed semi-automatic segmentation method was more time-effective than manual segmentation, with average saving-time of 11.2333 ± 6.3989 minutes and 9.9889 ±5.5086 minutes in the testing cohort and the independent validation cohort, respectively (both p &lt; 0.05). The predictive ability of the semi-automatic segmentation was also better than that of the manual segmentation both in the testing cohort and the independent validation cohort (AUC: 0.728 vs. 0.687 and 0.828 vs. 0.749, respectively). Conclusion: DECT delta radiomics serves as a promising biomarker for predicting chemotherapeutic response for far-advanced GC. Semi-automatic segmentation based on deep learning shows the potential for clinical use with increased reproducibility and decreased labor costs compared to the manual version.</description><subject>Abdomen</subject><subject>Chemotherapy</subject><subject>Deep learning</subject><subject>Gastric cancer</subject><subject>Medical prognosis</subject><subject>Metastasis</subject><subject>Morphology</subject><subject>Research Paper</subject><subject>Tumors</subject><issn>1837-9664</issn><issn>1837-9664</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><sourceid>PIMPY</sourceid><recordid>eNpdkUFLHDEUx4NYqlgP_QYBL3oYm0xmksylUNZqCwstWs_hbebNbpadZEwyFm_96M2qlLa55IX345f3-BPynrNLxVv2YWvhspGKNQfkmGuhqk7K5vCv-oicprRl5YiuVo14S46E4J3QWh6TX98j9s5m59d0scEx5A1GmHDOztJbTFPwCekQIr2GWEH_CN5iT28g5ViIxf4Z6eqJ3kLvwuhsoj9d3tArxIkuEaLfm-9wdBXMOYyw997hekSfSx38O_JmgF3C09f7hNxff_6x-FItv918XXxaVlZolive9BpXjW51jWUAa6XmVgmNNXLOhkF3FlBpHGTLbKtZ13ccVkIJxbu26aU4IR9fvNO8Goug_B9hZ6boRohPJoAz_3a825h1eDRKNpIrXgTnr4IYHmZM2YwuWdztwGOYk6kLxlitmCjo2X_oNszRl_VM3XZa1JprVaiLF8rGkFLE4c8wnJl9tKZEa56jFb8BNfKXQQ</recordid><startdate>20200101</startdate><enddate>20200101</enddate><creator>Tan, Jing-wen</creator><creator>Wang, Lan</creator><creator>Chen, Yong</creator><creator>Xi, WenQi</creator><creator>Ji, Jun</creator><creator>Wang, Lingyun</creator><creator>Xu, Xin</creator><creator>Zou, Long-kuan</creator><creator>Feng, Jian-xing</creator><creator>Zhang, Jun</creator><creator>Zhang, Huan</creator><general>Ivyspring International Publisher Pty Ltd</general><general>Ivyspring International Publisher</general><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>K9.</scope><scope>M0S</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20200101</creationdate><title>Predicting Chemotherapeutic Response for Far-advanced Gastric Cancer by Radiomics with Deep Learning Semi-automatic Segmentation</title><author>Tan, Jing-wen ; Wang, Lan ; Chen, Yong ; Xi, WenQi ; Ji, Jun ; Wang, Lingyun ; Xu, Xin ; Zou, Long-kuan ; Feng, Jian-xing ; Zhang, Jun ; Zhang, Huan</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c380t-14d8eb48582ecedcc681c738e2e110ff89cae78ef650c5809d91ab37371954d63</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Abdomen</topic><topic>Chemotherapy</topic><topic>Deep learning</topic><topic>Gastric cancer</topic><topic>Medical prognosis</topic><topic>Metastasis</topic><topic>Morphology</topic><topic>Research Paper</topic><topic>Tumors</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Tan, Jing-wen</creatorcontrib><creatorcontrib>Wang, Lan</creatorcontrib><creatorcontrib>Chen, Yong</creatorcontrib><creatorcontrib>Xi, WenQi</creatorcontrib><creatorcontrib>Ji, Jun</creatorcontrib><creatorcontrib>Wang, Lingyun</creatorcontrib><creatorcontrib>Xu, Xin</creatorcontrib><creatorcontrib>Zou, Long-kuan</creatorcontrib><creatorcontrib>Feng, Jian-xing</creatorcontrib><creatorcontrib>Zhang, Jun</creatorcontrib><creatorcontrib>Zhang, Huan</creatorcontrib><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Health &amp; Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni)</collection><collection>ProQuest Central</collection><collection>ProQuest Central Essentials</collection><collection>AUTh Library subscriptions: ProQuest Central</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Health &amp; Medical Complete (Alumni)</collection><collection>Health &amp; Medical Collection (Alumni Edition)</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Journal of Cancer</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Tan, Jing-wen</au><au>Wang, Lan</au><au>Chen, Yong</au><au>Xi, WenQi</au><au>Ji, Jun</au><au>Wang, Lingyun</au><au>Xu, Xin</au><au>Zou, Long-kuan</au><au>Feng, Jian-xing</au><au>Zhang, Jun</au><au>Zhang, Huan</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Predicting Chemotherapeutic Response for Far-advanced Gastric Cancer by Radiomics with Deep Learning Semi-automatic Segmentation</atitle><jtitle>Journal of Cancer</jtitle><date>2020-01-01</date><risdate>2020</risdate><volume>11</volume><issue>24</issue><spage>7224</spage><epage>7236</epage><pages>7224-7236</pages><issn>1837-9664</issn><eissn>1837-9664</eissn><abstract>Purpose: To build a dual-energy computed tomography (DECT) delta radiomics model to predict chemotherapeutic response for far-advanced gastric cancer (GC) patients. A semi-automatic segmentation method based on deep learning was designed, and its performance was compared with that of manual segmentation. Methods: This retrospective study included 86 patients with far-advanced GC treated with chemotherapy from September 2016 to December 2017 (66 and 20 in the training and testing cohorts, respectively). Delta radiomics features between the baseline and first follow-up DECT were modeled by random forest to predict the chemotherapeutic response evaluated by the second follow-up DECT. Nine feature subsets from confounding factors and delta radiomics features were used to choose the best model with 10-fold cross-validation in the training cohort. A semi-automatic segmentation method based on deep learning was developed to predict the chemotherapeutic response and compared with manual segmentation in the testing cohort, which was further validated in an independent validation cohort of 30 patients. Results: The best model, constructed by confounding factors and texture features, reached an average AUC of 0.752 in the training cohort. Our proposed semi-automatic segmentation method was more time-effective than manual segmentation, with average saving-time of 11.2333 ± 6.3989 minutes and 9.9889 ±5.5086 minutes in the testing cohort and the independent validation cohort, respectively (both p &lt; 0.05). The predictive ability of the semi-automatic segmentation was also better than that of the manual segmentation both in the testing cohort and the independent validation cohort (AUC: 0.728 vs. 0.687 and 0.828 vs. 0.749, respectively). Conclusion: DECT delta radiomics serves as a promising biomarker for predicting chemotherapeutic response for far-advanced GC. Semi-automatic segmentation based on deep learning shows the potential for clinical use with increased reproducibility and decreased labor costs compared to the manual version.</abstract><cop>Wyoming</cop><pub>Ivyspring International Publisher Pty Ltd</pub><pmid>33193886</pmid><doi>10.7150/jca.46704</doi><tpages>13</tpages><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 1837-9664
ispartof Journal of Cancer, 2020-01, Vol.11 (24), p.7224-7236
issn 1837-9664
1837-9664
language eng
recordid cdi_pubmedcentral_primary_oai_pubmedcentral_nih_gov_7646171
source Publicly Available Content Database; PubMed Central
subjects Abdomen
Chemotherapy
Deep learning
Gastric cancer
Medical prognosis
Metastasis
Morphology
Research Paper
Tumors
title Predicting Chemotherapeutic Response for Far-advanced Gastric Cancer by Radiomics with Deep Learning Semi-automatic Segmentation
url http://sfxeu10.hosted.exlibrisgroup.com/loughborough?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-29T16%3A53%3A53IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Predicting%20Chemotherapeutic%20Response%20for%20Far-advanced%20Gastric%20Cancer%20by%20Radiomics%20with%20Deep%20Learning%20Semi-automatic%20Segmentation&rft.jtitle=Journal%20of%20Cancer&rft.au=Tan,%20Jing-wen&rft.date=2020-01-01&rft.volume=11&rft.issue=24&rft.spage=7224&rft.epage=7236&rft.pages=7224-7236&rft.issn=1837-9664&rft.eissn=1837-9664&rft_id=info:doi/10.7150/jca.46704&rft_dat=%3Cproquest_pubme%3E2461002703%3C/proquest_pubme%3E%3Cgrp_id%3Ecdi_FETCH-LOGICAL-c380t-14d8eb48582ecedcc681c738e2e110ff89cae78ef650c5809d91ab37371954d63%3C/grp_id%3E%3Coa%3E%3C/oa%3E%3Curl%3E%3C/url%3E&rft_id=info:oai/&rft_pqid=2598328187&rft_id=info:pmid/33193886&rfr_iscdi=true