Characterization of the Plasmidome Encoding Carbapenemase and Mechanisms for Dissemination of Carbapenem-Resistant Enterobacteriaceae

• Published in: mSystems 2020-11, Vol.5 (6)
• Main Authors: Abe, Ryuichiro, Akeda, Yukihiro, Sugawara, Yo, Takeuchi, Dan, Matsumoto, Yuki, Motooka, Daisuke, Yamamoto, Norihisa, Kawahara, Ryuji, Tomono, Kazunori, Fujino, Yuji, Hamada, Shigeyuki
• Format: Article
• Language: English
• Subjects: Clinical Science and Epidemiology
• ISSN: 2379-5077; 2379-5077
• DOI: 10.1128/mSystems.00759-20

Carbapenem-resistant (CRE) infections, high in morbidity and mortality, pose serious clinical challenges due to limited treatment options. A previous CRE surveillance study on 1,507 patients from 43 hospitals in Osaka, Japan, revealed that 12% of patients carried CRE and that 95% of the CRE isolates were IMP-type carbapenemase producers. Here, the mechanisms for this regional dissemination of a single carbapenemase gene were investigated. Since the dissemination of CRE is primarily due to the transmission of carbapenemase genes located on plasmids, we analyzed the plasmidome of 230 CRE isolates carrying by whole-genome sequencing and Southern blotting. was found to be predominantly disseminated among chromosomally distinct isolates through the pKPI-6 plasmid. Underlying the vast clonal dissemination of pKPI-6, various subpopulations deriving from pKPI-6 were identified, which had acquired advantages for the dissemination of CRE isolates. A cluster exhibiting heteroresistance against meropenem by the transcriptional regulation of caused an outbreak likely through covert transmission of For stable carriage of , they occasionally integrated on their chromosomes. In addition, we detected one isolate that broadened the range of antimicrobial resistance through a single point mutation in on pKPI-6. Multifaceted analysis of the plasmidome granted us more accurate perspectives on the horizontal spread of CRE isolates, which is difficult to trace only by comparing the whole genomes. This study revealed the predominant spread of a specific carbapenemase-encoding plasmid accompanying the emergence of phenotypically diverse derivatives, which may facilitate further dissemination of CRE in various environments. Global dissemination of carbapenem-resistant (CRE) threatens human health by limiting the efficacy of antibiotics even against common bacterial infections. Carbapenem resistance, mainly due to carbapenemase, is generally encoded on plasmids and is spread across bacterial species by conjugation. Most CRE epidemiological studies have analyzed whole genomes or only contigs of CRE isolates. Here, plasmidome analysis on 230 CRE isolates carrying was performed to shed light into the dissemination of a single carbapenemase gene in Osaka, Japan. The predominant dissemination of by the pKPI-6 plasmid among genetically distinct isolates was revealed, as well as the emergences of pKPI-6 derivatives that acquired advantages for further disseminations. Underlying vast clonal