PySurf: A Framework for Database Accelerated Direct Dynamics

The greatest restriction to the theoretical study of the dynamics of photoinduced processes is computationally expensive electronic structure calculations. Machine learning algorithms have the potential to reduce the number of these computations significantly. Here, PySurf is introduced as an innova...

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Bibliographic Details
Published in:Journal of chemical theory and computation 2020-12, Vol.16 (12), p.7681-7689
Main Authors: Menger, Maximilian F. S. J, Ehrmaier, Johannes, Faraji, Shirin
Format: Article
Language:English
Subjects:
Algorithms
Computational chemistry
Dynamic structural analysis
Electronic structure
Interpolation
Machine learning
Potential energy
Rapid prototyping
Simulation
Spectroscopy and Excited States
Workflow
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Summary:The greatest restriction to the theoretical study of the dynamics of photoinduced processes is computationally expensive electronic structure calculations. Machine learning algorithms have the potential to reduce the number of these computations significantly. Here, PySurf is introduced as an innovative code framework, which is specifically designed for rapid prototyping and development tasks for data science applications in computational chemistry. It comes with powerful Plugin and Workflow engines, which allows intuitive customization for individual tasks. Data is automatically stored through the database framework, which enables additional interpolation of properties in previously evaluated regions of the conformational space. To illustrate the potential of the framework, a code for nonadiabatic surface hopping simulations based on the Landau–Zener algorithm is presented here. Deriving gradients from the interpolated potential energy surfaces allows for full-dimensional nonadiabatic surface hopping simulations using only adiabatic energies (energy only). Simulations of a pyrazine model and ab initio-based calculations of the SO2 molecule show that energy-only calculations with PySurf are able to correctly predict the nonadiabatic dynamics of these prototype systems. The results reveal the degree of sophistication, which can be achieved by the database accelerated energy-only surface hopping simulations being competitive to commonly used semiclassical approaches.
ISSN:1549-9618
1549-9626
DOI:10.1021/acs.jctc.0c00825