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A Photoclick‐Based High‐Throughput Screening for the Directed Evolution of Decarboxylase OleT
Enzymatic oxidative decarboxylation is an up‐and‐coming reaction yet lacking efficient screening methods for the directed evolution of decarboxylases. Here, we describe a simple photoclick assay for the detection of decarboxylation products and its application in a proof‐of‐principle directed evolut...
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Published in: | Chemistry : a European journal 2021-01, Vol.27 (3), p.954-958 |
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container_title | Chemistry : a European journal |
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creator | Markel, Ulrich Lanvers, Pia Sauer, Daniel F. Wittwer, Malte Dhoke, Gaurao V. Davari, Mehdi D. Schiffels, Johannes Schwaneberg, Ulrich |
description | Enzymatic oxidative decarboxylation is an up‐and‐coming reaction yet lacking efficient screening methods for the directed evolution of decarboxylases. Here, we describe a simple photoclick assay for the detection of decarboxylation products and its application in a proof‐of‐principle directed evolution study on the decarboxylase OleT. The assay was compatible with two frequently used OleT operation modes (directly using hydrogen peroxide as the enzyme's co‐substrate or using a reductase partner) and the screening of saturation mutagenesis libraries identified two enzyme variants shifting the enzyme's substrate preference from long chain fatty acids toward styrene derivatives. Overall, this photoclick assay holds promise to speed‐up the directed evolution of OleT and other decarboxylases.
Enzymatic decarboxylation is synthetically important, but so far, directed evolution of decarboxylases was impeded by the lack of a high‐throughput screening (HTS). Here, a simple photoclick‐based HTS was developed and used to evolve the decarboxylase OleT toward the acceptance of small aromatic substrates. The improved enzyme variants efficiently convert small aromatic substrates while the parent enzyme favors long‐chain fatty acids. |
doi_str_mv | 10.1002/chem.202003637 |
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Enzymatic decarboxylation is synthetically important, but so far, directed evolution of decarboxylases was impeded by the lack of a high‐throughput screening (HTS). Here, a simple photoclick‐based HTS was developed and used to evolve the decarboxylase OleT toward the acceptance of small aromatic substrates. The improved enzyme variants efficiently convert small aromatic substrates while the parent enzyme favors long‐chain fatty acids.</description><identifier>ISSN: 0947-6539</identifier><identifier>EISSN: 1521-3765</identifier><identifier>DOI: 10.1002/chem.202003637</identifier><identifier>PMID: 32955127</identifier><language>eng</language><publisher>Germany: Wiley Subscription Services, Inc</publisher><subject>Assaying ; Chemistry ; Communication ; Communications ; decarboxylase ; Decarboxylation ; Directed evolution ; Enzymes ; Evolution ; Fatty acids ; high-throughput screening ; Hydrogen peroxide ; P450 ; photoclick chemistry ; Reductases ; Saturation mutagenesis ; Screening ; Styrene ; Substrate preferences ; Substrates</subject><ispartof>Chemistry : a European journal, 2021-01, Vol.27 (3), p.954-958</ispartof><rights>2020 The Authors. Published by Wiley-VCH GmbH</rights><rights>2020 The Authors. Published by Wiley-VCH GmbH.</rights><rights>2020. This article is published under http://creativecommons.org/licenses/by-nc/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c5057-337af64a34f2b29fa0a8740e2d7c07938c8fc4ee5455082eb18908ae7cd51c333</citedby><cites>FETCH-LOGICAL-c5057-337af64a34f2b29fa0a8740e2d7c07938c8fc4ee5455082eb18908ae7cd51c333</cites><orcidid>0000-0001-9674-9339 ; 0000-0002-5655-5342 ; 0000-0003-4026-701X</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>230,314,776,780,881,27901,27902</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/32955127$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Markel, Ulrich</creatorcontrib><creatorcontrib>Lanvers, Pia</creatorcontrib><creatorcontrib>Sauer, Daniel F.</creatorcontrib><creatorcontrib>Wittwer, Malte</creatorcontrib><creatorcontrib>Dhoke, Gaurao V.</creatorcontrib><creatorcontrib>Davari, Mehdi D.</creatorcontrib><creatorcontrib>Schiffels, Johannes</creatorcontrib><creatorcontrib>Schwaneberg, Ulrich</creatorcontrib><title>A Photoclick‐Based High‐Throughput Screening for the Directed Evolution of Decarboxylase OleT</title><title>Chemistry : a European journal</title><addtitle>Chemistry</addtitle><description>Enzymatic oxidative decarboxylation is an up‐and‐coming reaction yet lacking efficient screening methods for the directed evolution of decarboxylases. Here, we describe a simple photoclick assay for the detection of decarboxylation products and its application in a proof‐of‐principle directed evolution study on the decarboxylase OleT. The assay was compatible with two frequently used OleT operation modes (directly using hydrogen peroxide as the enzyme's co‐substrate or using a reductase partner) and the screening of saturation mutagenesis libraries identified two enzyme variants shifting the enzyme's substrate preference from long chain fatty acids toward styrene derivatives. Overall, this photoclick assay holds promise to speed‐up the directed evolution of OleT and other decarboxylases.
Enzymatic decarboxylation is synthetically important, but so far, directed evolution of decarboxylases was impeded by the lack of a high‐throughput screening (HTS). Here, a simple photoclick‐based HTS was developed and used to evolve the decarboxylase OleT toward the acceptance of small aromatic substrates. The improved enzyme variants efficiently convert small aromatic substrates while the parent enzyme favors long‐chain fatty acids.</description><subject>Assaying</subject><subject>Chemistry</subject><subject>Communication</subject><subject>Communications</subject><subject>decarboxylase</subject><subject>Decarboxylation</subject><subject>Directed evolution</subject><subject>Enzymes</subject><subject>Evolution</subject><subject>Fatty acids</subject><subject>high-throughput screening</subject><subject>Hydrogen peroxide</subject><subject>P450</subject><subject>photoclick chemistry</subject><subject>Reductases</subject><subject>Saturation mutagenesis</subject><subject>Screening</subject><subject>Styrene</subject><subject>Substrate preferences</subject><subject>Substrates</subject><issn>0947-6539</issn><issn>1521-3765</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>24P</sourceid><recordid>eNqFkcFuEzEQhq0KREPLtcfKEucNY3u9ti9IJQ0NUlGRSM-W48xmXTbr4N1tyY1H6DP2SbpV2gAnTqPRfPPNSD8hJwzGDIB_8BWuxxw4gCiEOiAjJjnLhCrkKzICk6uskMIckrdtewMAphDiDTkU3EjJuBoRd0a_VbGLvg7-x8Pv-0-uxSWdhVU1NPMqxX5VbfqOfvcJsQnNipYx0a5Ceh4S-m6Ap7ex7rsQGxpLeo7epUX8ta0HEb2qcX5MXpeubvHdcz0i15-n88ksu7y6-DI5u8y8BKkyIZQri9yJvOQLbkoHTqsckC-VB2WE9rr0OaLMpQTNccG0Ae1Q-aVkXghxRD7uvJt-scalx6ZLrrabFNYubW10wf47aUJlV_HWKi2MYnIQvH8WpPizx7azN7FPzfCz5blShZaC64Ea7yifYtsmLPcXGNinSOxTJHYfybBw-vdfe_wlgwEwO-Au1Lj9j85OZtOvf-SPPJSbUw</recordid><startdate>20210113</startdate><enddate>20210113</enddate><creator>Markel, Ulrich</creator><creator>Lanvers, Pia</creator><creator>Sauer, Daniel F.</creator><creator>Wittwer, Malte</creator><creator>Dhoke, Gaurao V.</creator><creator>Davari, Mehdi D.</creator><creator>Schiffels, Johannes</creator><creator>Schwaneberg, Ulrich</creator><general>Wiley Subscription Services, Inc</general><general>John Wiley and Sons Inc</general><scope>24P</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7SR</scope><scope>8BQ</scope><scope>8FD</scope><scope>JG9</scope><scope>K9.</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0001-9674-9339</orcidid><orcidid>https://orcid.org/0000-0002-5655-5342</orcidid><orcidid>https://orcid.org/0000-0003-4026-701X</orcidid></search><sort><creationdate>20210113</creationdate><title>A Photoclick‐Based High‐Throughput Screening for the Directed Evolution of Decarboxylase OleT</title><author>Markel, Ulrich ; 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Enzymatic decarboxylation is synthetically important, but so far, directed evolution of decarboxylases was impeded by the lack of a high‐throughput screening (HTS). Here, a simple photoclick‐based HTS was developed and used to evolve the decarboxylase OleT toward the acceptance of small aromatic substrates. The improved enzyme variants efficiently convert small aromatic substrates while the parent enzyme favors long‐chain fatty acids.</abstract><cop>Germany</cop><pub>Wiley Subscription Services, Inc</pub><pmid>32955127</pmid><doi>10.1002/chem.202003637</doi><tpages>5</tpages><orcidid>https://orcid.org/0000-0001-9674-9339</orcidid><orcidid>https://orcid.org/0000-0002-5655-5342</orcidid><orcidid>https://orcid.org/0000-0003-4026-701X</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Assaying Chemistry Communication Communications decarboxylase Decarboxylation Directed evolution Enzymes Evolution Fatty acids high-throughput screening Hydrogen peroxide P450 photoclick chemistry Reductases Saturation mutagenesis Screening Styrene Substrate preferences Substrates |
title | A Photoclick‐Based High‐Throughput Screening for the Directed Evolution of Decarboxylase OleT |
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