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Food or just a free ride? A meta-analysis reveals the global diversity of the Plastisphere
It is now indisputable that plastics are ubiquitous and problematic in ecosystems globally. Many suggestions have been made about the role that biofilms colonizing plastics in the environment—termed the “Plastisphere”—may play in the transportation and ecological impact of these plastics. By collect...
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Published in: | The ISME Journal 2021-03, Vol.15 (3), p.789-806 |
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description | It is now indisputable that plastics are ubiquitous and problematic in ecosystems globally. Many suggestions have been made about the role that biofilms colonizing plastics in the environment—termed the “Plastisphere”—may play in the transportation and ecological impact of these plastics. By collecting and re-analyzing all raw 16S rRNA gene sequencing and metadata from 2,229 samples within 35 studies, we have performed the first meta-analysis of the Plastisphere in marine, freshwater, other aquatic (e.g., brackish or aquaculture) and terrestrial environments. We show that random forest models can be trained to differentiate between groupings of environmental factors as well as aspects of study design, but—crucially—also between plastics when compared with control biofilms and between different plastic types and community successional stages. Our meta-analysis confirms that potentially biodegrading Plastisphere members, the hydrocarbonoclastic
Oceanospirillales
and
Alteromonadales
are consistently more abundant in plastic than control biofilm samples across multiple studies and environments. This indicates the predilection of these organisms for plastics and confirms the urgent need for their ability to biodegrade plastics to be comprehensively tested. We also identified key knowledge gaps that should be addressed by future studies. |
doi_str_mv | 10.1038/s41396-020-00814-9 |
format | article |
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Oceanospirillales
and
Alteromonadales
are consistently more abundant in plastic than control biofilm samples across multiple studies and environments. This indicates the predilection of these organisms for plastics and confirms the urgent need for their ability to biodegrade plastics to be comprehensively tested. We also identified key knowledge gaps that should be addressed by future studies.</description><identifier>ISSN: 1751-7362</identifier><identifier>EISSN: 1751-7370</identifier><identifier>DOI: 10.1038/s41396-020-00814-9</identifier><identifier>PMID: 33139870</identifier><language>eng</language><publisher>London: Nature Publishing Group UK</publisher><subject>38/23 ; 631/326/171/1818 ; 631/326/171/1878 ; 631/326/2565/2134 ; 631/326/2565/855 ; 704/158/855 ; Aquaculture ; Biofilms ; Biomedical and Life Sciences ; Ecology ; Ecosystem ; Environmental factors ; Evolutionary Biology ; Gene sequencing ; Life Sciences ; Meta-analysis ; Microbial Ecology ; Microbial Genetics and Genomics ; Microbiology ; Plastics ; RNA, Ribosomal, 16S - genetics ; rRNA 16S ; Terrestrial environments</subject><ispartof>The ISME Journal, 2021-03, Vol.15 (3), p.789-806</ispartof><rights>The Author(s) 2020</rights><rights>The Author(s) 2020. This work is published under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c474t-f30acc0e8185d47c3d504c71bc84c7a7f2b0514cbbcd231fb62e3f74fa5f8e5a3</citedby><cites>FETCH-LOGICAL-c474t-f30acc0e8185d47c3d504c71bc84c7a7f2b0514cbbcd231fb62e3f74fa5f8e5a3</cites><orcidid>0000-0003-0562-2610 ; 0000-0001-9008-0697</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8027867/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8027867/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,727,780,784,885,27924,27925,53791,53793</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33139870$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Wright, Robyn J.</creatorcontrib><creatorcontrib>Langille, Morgan G. I.</creatorcontrib><creatorcontrib>Walker, Tony R.</creatorcontrib><title>Food or just a free ride? A meta-analysis reveals the global diversity of the Plastisphere</title><title>The ISME Journal</title><addtitle>ISME J</addtitle><addtitle>ISME J</addtitle><description>It is now indisputable that plastics are ubiquitous and problematic in ecosystems globally. Many suggestions have been made about the role that biofilms colonizing plastics in the environment—termed the “Plastisphere”—may play in the transportation and ecological impact of these plastics. By collecting and re-analyzing all raw 16S rRNA gene sequencing and metadata from 2,229 samples within 35 studies, we have performed the first meta-analysis of the Plastisphere in marine, freshwater, other aquatic (e.g., brackish or aquaculture) and terrestrial environments. We show that random forest models can be trained to differentiate between groupings of environmental factors as well as aspects of study design, but—crucially—also between plastics when compared with control biofilms and between different plastic types and community successional stages. Our meta-analysis confirms that potentially biodegrading Plastisphere members, the hydrocarbonoclastic
Oceanospirillales
and
Alteromonadales
are consistently more abundant in plastic than control biofilm samples across multiple studies and environments. This indicates the predilection of these organisms for plastics and confirms the urgent need for their ability to biodegrade plastics to be comprehensively tested. We also identified key knowledge gaps that should be addressed by future studies.</description><subject>38/23</subject><subject>631/326/171/1818</subject><subject>631/326/171/1878</subject><subject>631/326/2565/2134</subject><subject>631/326/2565/855</subject><subject>704/158/855</subject><subject>Aquaculture</subject><subject>Biofilms</subject><subject>Biomedical and Life Sciences</subject><subject>Ecology</subject><subject>Ecosystem</subject><subject>Environmental factors</subject><subject>Evolutionary Biology</subject><subject>Gene sequencing</subject><subject>Life Sciences</subject><subject>Meta-analysis</subject><subject>Microbial Ecology</subject><subject>Microbial Genetics and Genomics</subject><subject>Microbiology</subject><subject>Plastics</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>rRNA 16S</subject><subject>Terrestrial environments</subject><issn>1751-7362</issn><issn>1751-7370</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><recordid>eNp9kTtPKzEQhS0E4v0HKK4s0dxmwa9dOw0IIV4SEhTQ0Fhe7zhxtFkHezdS_v01BMKFgmosz3fO2HMQOqLkhBKuTpOgfFQVhJGCEEVFMdpAu1SWtJBcks31uWI7aC-lKSGlrCq5jXY4z0olyS56uQ6hwSHi6ZB6bLCLADj6Bs7xBZ5BbwrTmXaZfMIRFmDahPsJ4HEbatPixi8gJt8vcXDv94-tSb1P8wlEOEBbLvNw-FH30fP11dPlbXH_cHN3eXFfWCFFXzhOjLUEFFVlI6TlTUmElbS2KhcjHatJSYWta9swTl1dMeBOCmdKp6A0fB-drXznQz2DxkLXR9PqefQzE5c6GK-_dzo_0eOw0IowqSqZDf5-GMTwOkDq9cwnC21rOghD0kyUkueFsyqjxz_QaRhi3tAbNcp2klKeKbaibAwpRXDrx1Ci36LTq-h0jk6_R6dHWfTn_2-sJZ9ZZYCvgJRb3Rji1-xfbP8Bf_6lbA</recordid><startdate>20210301</startdate><enddate>20210301</enddate><creator>Wright, Robyn J.</creator><creator>Langille, Morgan G. 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A meta-analysis reveals the global diversity of the Plastisphere</title><author>Wright, Robyn J. ; Langille, Morgan G. 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I.</au><au>Walker, Tony R.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Food or just a free ride? A meta-analysis reveals the global diversity of the Plastisphere</atitle><jtitle>The ISME Journal</jtitle><stitle>ISME J</stitle><addtitle>ISME J</addtitle><date>2021-03-01</date><risdate>2021</risdate><volume>15</volume><issue>3</issue><spage>789</spage><epage>806</epage><pages>789-806</pages><issn>1751-7362</issn><eissn>1751-7370</eissn><abstract>It is now indisputable that plastics are ubiquitous and problematic in ecosystems globally. Many suggestions have been made about the role that biofilms colonizing plastics in the environment—termed the “Plastisphere”—may play in the transportation and ecological impact of these plastics. By collecting and re-analyzing all raw 16S rRNA gene sequencing and metadata from 2,229 samples within 35 studies, we have performed the first meta-analysis of the Plastisphere in marine, freshwater, other aquatic (e.g., brackish or aquaculture) and terrestrial environments. We show that random forest models can be trained to differentiate between groupings of environmental factors as well as aspects of study design, but—crucially—also between plastics when compared with control biofilms and between different plastic types and community successional stages. Our meta-analysis confirms that potentially biodegrading Plastisphere members, the hydrocarbonoclastic
Oceanospirillales
and
Alteromonadales
are consistently more abundant in plastic than control biofilm samples across multiple studies and environments. This indicates the predilection of these organisms for plastics and confirms the urgent need for their ability to biodegrade plastics to be comprehensively tested. We also identified key knowledge gaps that should be addressed by future studies.</abstract><cop>London</cop><pub>Nature Publishing Group UK</pub><pmid>33139870</pmid><doi>10.1038/s41396-020-00814-9</doi><tpages>18</tpages><orcidid>https://orcid.org/0000-0003-0562-2610</orcidid><orcidid>https://orcid.org/0000-0001-9008-0697</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | 38/23 631/326/171/1818 631/326/171/1878 631/326/2565/2134 631/326/2565/855 704/158/855 Aquaculture Biofilms Biomedical and Life Sciences Ecology Ecosystem Environmental factors Evolutionary Biology Gene sequencing Life Sciences Meta-analysis Microbial Ecology Microbial Genetics and Genomics Microbiology Plastics RNA, Ribosomal, 16S - genetics rRNA 16S Terrestrial environments |
title | Food or just a free ride? A meta-analysis reveals the global diversity of the Plastisphere |
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