Comprehensive Profile Analysis of Differentially Expressed circRNAs in Glucose Deprivation-Induced Human Nucleus Pulposus Cell Degeneration

• Published in: BioMed research international 2021, Vol.2021, p.1-14
• Main Authors: Chang, Hongze, Wang, Hongzhang, Yang, Xiaolong, You, Kemin, Jiang, Mingwei, Cai, Feng, Zhang, Yan, Liu, Liang, Liu, Hui, Liu, Xiaodong
• Format: Article
• Language: English
• Subjects: Analysis; Biomechanics; Cell culture; Cluster analysis; Clustering; Connective tissue cells; Degeneration; Degeneration (Pathology); Deprivation; Development and progression; Dextrose; DNA microarrays; Extracellular matrix; Gene expression; Genetic aspects; Glucose; Glucose metabolism; Health aspects; Homeostasis; Identification and classification; Intervertebral discs; Intervertebral disk; Medical research; Medicine, Experimental; miRNA; Nuclei (cytology); Nucleus pulposus; Nutrition; Physiological aspects; Polymerase chain reaction; Properties; Reagents; Ribonuclease; RNA; RNA sequencing; Sequences; Software; Spinal diseases; Therapeutic targets; Time series; Transcription
• ISSN: 2314-6133; 2314-6141
• DOI: 10.1155/2021/4770792

Nucleus pulposus (NP) is the core substance to maintain the homeostasis of intervertebral disc and stability of biomechanics. The insufficient supply of nutrition (especially glucose) is an important factor that leads to the degeneration of NP cells. circRNAs play an important role in the process of intervertebral disc degeneration (IDD) by regulating the functions of NP cells. However, glucose deprivation-related circRNAs and their functions in IDD have not been reported. In this study, the differentially expressed circRNAs in NP cells after 0, 6, 12, and 24 h of glucose deprivation culture were detected by a microarray assay. Besides, time series clustering analysis by STEM software obtained the differentially up- and downregulated circRNAs during glucose deficiency. Then, the main functions and pathways of up- and downregulated circRNAs were predicted by the functional enrichment analysis. By constructing the circRNA-miRNA regulatory network, the potential mechanisms of the most differentially expressed circRNAs were predicted. In addition, according to in vitro validation, circ_0075062 was upregulated in degenerating NP tissues and glucose deprivation-induced NP cell degeneration. Based on Sanger sequencing and RNase tolerance assay, circ_0075062 was the circular transcript. Interfering with circ_0075062 expression could potentially alleviate the imbalance of extracellular matrix (ECM) synthesis and degradation in the NP cells induced by glucose deprivation. Together, these findings help us gain a comprehensive understanding of the underlying mechanisms of IDD, and circ_0075062 may be a promising therapeutic target of IDD.